Agrimoniin

Details

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Internal ID fef6d0b9-dfb5-4ec6-85ed-84d29fef3ae6
Taxonomy Phenylpropanoids and polyketides > Tannins > Hydrolyzable tannins
IUPAC Name [(1R,2S,19R,20R,22R)-7,8,9,12,13,14,28,29,30,33,34,35-dodecahydroxy-4,17,25,38-tetraoxo-3,18,21,24,39-pentaoxaheptacyclo[20.17.0.02,19.05,10.011,16.026,31.032,37]nonatriaconta-5,7,9,11,13,15,26,28,30,32,34,36-dodecaen-20-yl] 2-[5-[[(1R,2S,19R,20R,22R)-7,8,9,12,13,14,28,29,30,33,34,35-dodecahydroxy-4,17,25,38-tetraoxo-3,18,21,24,39-pentaoxaheptacyclo[20.17.0.02,19.05,10.011,16.026,31.032,37]nonatriaconta-5,7,9,11,13,15,26,28,30,32,34,36-dodecaen-20-yl]oxycarbonyl]-2,3-dihydroxyphenoxy]-3,4,5-trihydroxybenzoate
SMILES (Canonical) C1C2C(C3C(C(O2)OC(=O)C4=CC(=C(C(=C4)OC5=C(C(=C(C=C5C(=O)OC6C7C(C8C(O6)COC(=O)C9=CC(=C(C(=C9C2=C(C(=C(C=C2C(=O)O8)O)O)O)O)O)O)OC(=O)C2=CC(=C(C(=C2C2=C(C(=C(C=C2C(=O)O7)O)O)O)O)O)O)O)O)O)O)O)OC(=O)C2=CC(=C(C(=C2C2=C(C(=C(C=C2C(=O)O3)O)O)O)O)O)O)OC(=O)C2=CC(=C(C(=C2C2=C(C(=C(C=C2C(=O)O1)O)O)O)O)O)O
SMILES (Isomeric) C1[C@@H]2[C@H]([C@H]3[C@H]([C@H](O2)OC(=O)C4=CC(=C(C(=C4)OC5=C(C(=C(C=C5C(=O)O[C@@H]6[C@H]7[C@H]([C@H]8[C@H](O6)COC(=O)C9=CC(=C(C(=C9C2=C(C(=C(C=C2C(=O)O8)O)O)O)O)O)O)OC(=O)C2=CC(=C(C(=C2C2=C(C(=C(C=C2C(=O)O7)O)O)O)O)O)O)O)O)O)O)O)OC(=O)C2=CC(=C(C(=C2C2=C(C(=C(C=C2C(=O)O3)O)O)O)O)O)O)OC(=O)C2=CC(=C(C(=C2C2=C(C(=C(C=C2C(=O)O1)O)O)O)O)O)O
InChI InChI=1S/C82H54O52/c83-24-1-14(71(112)133-81-69-67(129-76(117)19-7-29(88)50(98)59(107)41(19)43-21(78(119)131-69)9-31(90)52(100)61(43)109)65-35(125-81)12-122-72(113)15-3-25(84)46(94)55(103)37(15)39-17(74(115)127-65)5-27(86)48(96)57(39)105)2-34(45(24)93)124-64-23(11-33(92)54(102)63(64)111)80(121)134-82-70-68(130-77(118)20-8-30(89)51(99)60(108)42(20)44-22(79(120)132-70)10-32(91)53(101)62(44)110)66-36(126-82)13-123-73(114)16-4-26(85)47(95)56(104)38(16)40-18(75(116)128-66)6-28(87)49(97)58(40)106/h1-11,35-36,65-70,81-111H,12-13H2/t35-,36-,65-,66-,67+,68+,69-,70-,81-,82-/m1/s1
InChI Key BZAFROBDXRJYTQ-JVEQELPQSA-N
Popularity 72 references in papers

Physical and Chemical Properties

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Molecular Formula C82H54O52
Molecular Weight 1871.30 g/mol
Exact Mass 1870.1581119 g/mol
Topological Polar Surface Area (TPSA) 877.00 Ų
XlogP 4.20
Atomic LogP (AlogP) 3.69
H-Bond Acceptor 52
H-Bond Donor 29
Rotatable Bonds 6

Synonyms

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82203-01-8
CHEBI:581177
CHEMBL524674
C10210
C82H54O52
C82-H54-O52
D85140
Q27105176
.alpha.-D-Glucopyranose, cyclic 2,3:4,6-bis(4,4',5,5',6,6'-hexahydroxy(1,1'-biphenyl)-2,2'-dicarboxylate) 1-(2-(5-(((2,3:4,6-bis-O-((4,4',5,5',6,6'-hexahydroxy(1,1'-biphenyl)-2,2'-diyl)dicarbonyl)-.alpha.-D-glucopyranosyl)oxy)carbonyl)-2,3-dihydroxyphenoxy)-3,4,5-trihydroxybenzoate), stereoisomer
[dodecahydroxy(tetraoxo)[?]yl] 2-[5-[dodecahydroxy(tetraoxo)[?]yl]oxycarbonyl-2,3-dihydroxy-phenoxy]-3,4,5-trihydroxy-benzoate

2D Structure

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2D Structure of Agrimoniin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.5561 55.61%
Caco-2 - 0.8554 85.54%
Blood Brain Barrier - 0.7750 77.50%
Human oral bioavailability + 0.5714 57.14%
Subcellular localzation Mitochondria 0.5967 59.67%
OATP2B1 inhibitior - 0.7187 71.87%
OATP1B1 inhibitior + 0.7400 74.00%
OATP1B3 inhibitior + 0.9345 93.45%
MATE1 inhibitior + 0.5600 56.00%
OCT2 inhibitior - 0.8000 80.00%
BSEP inhibitior + 0.8871 88.71%
P-glycoprotein inhibitior + 0.7434 74.34%
P-glycoprotein substrate - 0.6291 62.91%
CYP3A4 substrate + 0.6286 62.86%
CYP2C9 substrate - 0.7986 79.86%
CYP2D6 substrate - 0.8498 84.98%
CYP3A4 inhibition - 0.8993 89.93%
CYP2C9 inhibition - 0.8682 86.82%
CYP2C19 inhibition - 0.8049 80.49%
CYP2D6 inhibition - 0.9340 93.40%
CYP1A2 inhibition - 0.8484 84.84%
CYP2C8 inhibition + 0.7418 74.18%
CYP inhibitory promiscuity - 0.8911 89.11%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6562 65.62%
Eye corrosion - 0.9905 99.05%
Eye irritation - 0.8955 89.55%
Skin irritation - 0.8145 81.45%
Skin corrosion - 0.9507 95.07%
Ames mutagenesis - 0.5700 57.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7772 77.72%
Micronuclear + 0.7833 78.33%
Hepatotoxicity - 0.5625 56.25%
skin sensitisation - 0.8148 81.48%
Respiratory toxicity + 0.6111 61.11%
Reproductive toxicity + 0.6667 66.67%
Mitochondrial toxicity + 0.6250 62.50%
Nephrotoxicity - 0.6891 68.91%
Acute Oral Toxicity (c) III 0.5149 51.49%
Estrogen receptor binding + 0.6906 69.06%
Androgen receptor binding + 0.7403 74.03%
Thyroid receptor binding + 0.6123 61.23%
Glucocorticoid receptor binding + 0.6204 62.04%
Aromatase binding + 0.6482 64.82%
PPAR gamma + 0.7462 74.62%
Honey bee toxicity - 0.8063 80.63%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.5549 55.49%
Fish aquatic toxicity + 0.8766 87.66%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.25% 91.11%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 93.75% 97.21%
CHEMBL1951 P21397 Monoamine oxidase A 93.67% 91.49%
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 91.73% 95.17%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 91.42% 94.00%
CHEMBL3194 P02766 Transthyretin 90.80% 90.71%
CHEMBL3475 P05121 Plasminogen activator inhibitor-1 90.27% 83.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.61% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.50% 86.33%
CHEMBL3060 Q9Y345 Glycine transporter 2 89.41% 99.17%
CHEMBL1806 P11388 DNA topoisomerase II alpha 88.65% 89.00%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 88.25% 96.21%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 87.79% 96.95%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 86.80% 99.23%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 85.85% 99.15%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 85.67% 83.57%
CHEMBL2535 P11166 Glucose transporter 85.14% 98.75%
CHEMBL3864 Q06124 Protein-tyrosine phosphatase 2C 84.18% 94.42%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.12% 95.89%
CHEMBL1899 P46098 Serotonin 3a (5-HT3a) receptor 83.60% 100.00%
CHEMBL340 P08684 Cytochrome P450 3A4 83.58% 91.19%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 83.41% 95.50%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 83.18% 95.78%
CHEMBL3401 O75469 Pregnane X receptor 82.10% 94.73%
CHEMBL4530 P00488 Coagulation factor XIII 81.86% 96.00%
CHEMBL2094127 P06493 Cyclin-dependent kinase 1/cyclin B 81.33% 96.00%
CHEMBL4208 P20618 Proteasome component C5 80.52% 90.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 80.26% 97.09%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Agrimonia pilosa
Buddleja coriacea
Casimiroa tetrameria
Clematicissus simsiana
Colchicum speciosum
Fragaria × ananassa
Heliomeris multiflora
Ligularia dentata
Rosa davurica
Rosa laevigata
Senecio vernalis

Cross-Links

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PubChem 16129621
NPASS NPC40078
LOTUS LTS0113088
wikiData Q27105176