3,8'-Biapigenin

Details

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Internal ID cd8a3218-bd1e-42e1-baa8-3a33525fa99a
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Biflavonoids and polyflavonoids
IUPAC Name 3-[5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxochromen-8-yl]-5,7-dihydroxy-2-(4-hydroxyphenyl)chromen-4-one
SMILES (Canonical) C1=CC(=CC=C1C2=CC(=O)C3=C(O2)C(=C(C=C3O)O)C4=C(OC5=CC(=CC(=C5C4=O)O)O)C6=CC=C(C=C6)O)O
SMILES (Isomeric) C1=CC(=CC=C1C2=CC(=O)C3=C(O2)C(=C(C=C3O)O)C4=C(OC5=CC(=CC(=C5C4=O)O)O)C6=CC=C(C=C6)O)O
InChI InChI=1S/C30H18O10/c31-15-5-1-13(2-6-15)22-12-21(37)24-19(35)11-20(36)26(30(24)39-22)27-28(38)25-18(34)9-17(33)10-23(25)40-29(27)14-3-7-16(32)8-4-14/h1-12,31-36H
InChI Key IQAMTZLKUHMPPE-UHFFFAOYSA-N
Popularity 22 references in papers

Physical and Chemical Properties

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Molecular Formula C30H18O10
Molecular Weight 538.50 g/mol
Exact Mass 538.08999677 g/mol
Topological Polar Surface Area (TPSA) 174.00 Ų
XlogP 5.00
Atomic LogP (AlogP) 5.13
H-Bond Acceptor 10
H-Bond Donor 6
Rotatable Bonds 3

Synonyms

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101140-06-1
3,8''-biapigenin
biapigenin
13,Ii8-Biapigenin
CHEMBL515252
Biapigenin; I3,II8-Biapigenin
3-[5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxochromen-8-yl]-5,7-dihydroxy-2-(4-hydroxyphenyl)chromen-4-one
4',4''',5,5'',7,7''-Hexahydroxy-3,8''-biflavone
5,5',7,7'-Tetrahydroxy-2,2'-bis(4-hydroxyphenyl)-4H,4'H-[3,8'-bichromene]-4,4'-dione
3,8''''-biapigenin
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of 3,8'-Biapigenin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9336 93.36%
Caco-2 - 0.8536 85.36%
Blood Brain Barrier - 0.8250 82.50%
Human oral bioavailability - 0.8000 80.00%
Subcellular localzation Mitochondria 0.8010 80.10%
OATP2B1 inhibitior + 0.5762 57.62%
OATP1B1 inhibitior + 0.7502 75.02%
OATP1B3 inhibitior - 0.2208 22.08%
MATE1 inhibitior + 0.6600 66.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.4701 47.01%
P-glycoprotein inhibitior - 0.5478 54.78%
P-glycoprotein substrate - 0.6613 66.13%
CYP3A4 substrate + 0.6125 61.25%
CYP2C9 substrate - 0.6443 64.43%
CYP2D6 substrate - 0.8503 85.03%
CYP3A4 inhibition + 0.6172 61.72%
CYP2C9 inhibition + 0.8920 89.20%
CYP2C19 inhibition + 0.6827 68.27%
CYP2D6 inhibition - 0.9322 93.22%
CYP1A2 inhibition + 0.6838 68.38%
CYP2C8 inhibition + 0.9135 91.35%
CYP inhibitory promiscuity + 0.5157 51.57%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.7320 73.20%
Eye corrosion - 0.9929 99.29%
Eye irritation + 0.5457 54.57%
Skin irritation + 0.5256 52.56%
Skin corrosion - 0.9525 95.25%
Ames mutagenesis + 0.6200 62.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3778 37.78%
Micronuclear + 0.9200 92.00%
Hepatotoxicity + 0.5375 53.75%
skin sensitisation - 0.8881 88.81%
Respiratory toxicity + 0.6778 67.78%
Reproductive toxicity + 0.7000 70.00%
Mitochondrial toxicity + 0.5625 56.25%
Nephrotoxicity - 0.6616 66.16%
Acute Oral Toxicity (c) II 0.6295 62.95%
Estrogen receptor binding + 0.8726 87.26%
Androgen receptor binding + 0.9450 94.50%
Thyroid receptor binding + 0.5997 59.97%
Glucocorticoid receptor binding + 0.8026 80.26%
Aromatase binding + 0.5750 57.50%
PPAR gamma + 0.8371 83.71%
Honey bee toxicity - 0.7983 79.83%
Biodegradation - 0.9500 95.00%
Crustacea aquatic toxicity - 0.6100 61.00%
Fish aquatic toxicity + 0.9283 92.83%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1293236 P46063 ATP-dependent DNA helicase Q1 12589.3 nM
Potency
via CMAUP
CHEMBL1293237 P54132 Bloom syndrome protein 12589.3 nM
Potency
via CMAUP
CHEMBL340 P08684 Cytochrome P450 3A4 80 nM
IC50
PMID: 20408551
CHEMBL2392 P06746 DNA polymerase beta 3162.3 nM
Potency
via CMAUP
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 1995.3 nM
Potency
via CMAUP
CHEMBL4361 Q07820 Induced myeloid leukemia cell differentiation protein Mcl-1 2725.54 nM
IC50
via CMAUP
CHEMBL1293226 B2RXH2 Lysine-specific demethylase 4D-like 35481.3 nM
Potency
via CMAUP
CHEMBL1293224 P10636 Microtubule-associated protein tau 15848.9 nM
15848.9 nM
Potency
Potency
via CMAUP
via CMAUP
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 4500 nM
IC50
PMID: 25907369
CHEMBL1075189 P14618 Pyruvate kinase isozymes M1/M2 7943.3 nM
7943.3 nM
Potency
Potency
via CMAUP
via CMAUP

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL242 Q92731 Estrogen receptor beta 98.63% 98.35%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.88% 91.11%
CHEMBL1806 P11388 DNA topoisomerase II alpha 96.15% 89.00%
CHEMBL3194 P02766 Transthyretin 95.45% 90.71%
CHEMBL2581 P07339 Cathepsin D 93.22% 98.95%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 92.27% 94.00%
CHEMBL3038469 P24941 CDK2/Cyclin A 91.72% 91.38%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 91.23% 99.15%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 90.58% 95.64%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 90.20% 94.45%
CHEMBL3401 O75469 Pregnane X receptor 89.02% 94.73%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 87.31% 95.56%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 85.66% 90.71%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 85.57% 96.21%
CHEMBL5284 Q96RR4 CaM-kinase kinase beta 85.55% 89.23%
CHEMBL1293249 Q13887 Kruppel-like factor 5 84.74% 86.33%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 84.00% 99.23%
CHEMBL308 P06493 Cyclin-dependent kinase 1 82.97% 91.73%
CHEMBL2553 Q15418 Ribosomal protein S6 kinase alpha 1 82.74% 85.11%
CHEMBL1951 P21397 Monoamine oxidase A 82.52% 91.49%
CHEMBL5408 Q9UHD2 Serine/threonine-protein kinase TBK1 81.11% 90.48%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 80.68% 91.71%
CHEMBL4530 P00488 Coagulation factor XIII 80.17% 96.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Fagopyrum esculentum
Garcinia xanthochymus
Hypericum perforatum
Hypericum scabrum
Hypericum thasium

Cross-Links

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PubChem 10414856
NPASS NPC288840
ChEMBL CHEMBL515252
LOTUS LTS0048872
wikiData Q105117624