(1Z,4E)-germacrene B

Details

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Internal ID 2d736bcb-e03e-470d-978f-5679475ba076
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Sesquiterpenoids > Germacrane sesquiterpenoids
IUPAC Name (1Z,5E)-1,5-dimethyl-8-propan-2-ylidenecyclodeca-1,5-diene
SMILES (Canonical) CC1=CCCC(=CCC(=C(C)C)CC1)C
SMILES (Isomeric) C/C/1=C/CC/C(=C/CC(=C(C)C)CC1)/C
InChI InChI=1S/C15H24/c1-12(2)15-10-8-13(3)6-5-7-14(4)9-11-15/h6,9H,5,7-8,10-11H2,1-4H3/b13-6-,14-9+
InChI Key GXEGJTGWYVZSNR-LBJJKJHXSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C15H24
Molecular Weight 204.35 g/mol
Exact Mass 204.187800766 g/mol
Topological Polar Surface Area (TPSA) 0.00 Ų
XlogP 4.10
Atomic LogP (AlogP) 5.18
H-Bond Acceptor 0
H-Bond Donor 0
Rotatable Bonds 0

Synonyms

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(1Z,5E)-8-isopropylidene-1,5-dimethylcyclodeca-1,5-diene
(1Z,4E)-germacra-1(10),4,7(11)-triene (1Z,5E)-1,5-dimethyl-8-(propan-2-ylidene)cyclodeca-1,5-diene
1,5-Cyclodecadiene, 1,5-dimethyl-8-(1-methylethylidene)-, (E,E)-
CHEBI:49693
(1Z,5E)-1,5-dimethyl-8-propan-2-ylidenecyclodeca-1,5-diene
LMPR0103090012
(1Z,4E)-germacra-1(10),4,7(11)-triene
Q27121631
(1Z,5E)-1,5-dimethyl-8-(propan-2-ylidene)cyclodeca-1,5-diene

2D Structure

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2D Structure of (1Z,4E)-germacrene B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9933 99.33%
Caco-2 + 0.9753 97.53%
Blood Brain Barrier + 0.9500 95.00%
Human oral bioavailability + 0.6286 62.86%
Subcellular localzation Lysosomes 0.4255 42.55%
OATP2B1 inhibitior - 0.8468 84.68%
OATP1B1 inhibitior + 0.9642 96.42%
OATP1B3 inhibitior + 0.9557 95.57%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior - 0.7227 72.27%
P-glycoprotein inhibitior - 0.9560 95.60%
P-glycoprotein substrate - 0.9643 96.43%
CYP3A4 substrate - 0.6160 61.60%
CYP2C9 substrate - 0.8078 80.78%
CYP2D6 substrate - 0.7601 76.01%
CYP3A4 inhibition - 0.9515 95.15%
CYP2C9 inhibition - 0.8556 85.56%
CYP2C19 inhibition - 0.8447 84.47%
CYP2D6 inhibition - 0.9427 94.27%
CYP1A2 inhibition - 0.7131 71.31%
CYP2C8 inhibition - 0.9384 93.84%
CYP inhibitory promiscuity - 0.7471 74.71%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.6800 68.00%
Carcinogenicity (trinary) Warning 0.4922 49.22%
Eye corrosion + 0.5247 52.47%
Eye irritation + 0.9130 91.30%
Skin irritation + 0.7729 77.29%
Skin corrosion - 0.9586 95.86%
Ames mutagenesis - 0.7900 79.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6595 65.95%
Micronuclear - 0.9900 99.00%
Hepatotoxicity + 0.7625 76.25%
skin sensitisation + 0.9263 92.63%
Respiratory toxicity - 0.6444 64.44%
Reproductive toxicity - 0.7444 74.44%
Mitochondrial toxicity - 0.6625 66.25%
Nephrotoxicity + 0.5282 52.82%
Acute Oral Toxicity (c) III 0.7428 74.28%
Estrogen receptor binding - 0.9360 93.60%
Androgen receptor binding - 0.7088 70.88%
Thyroid receptor binding - 0.8379 83.79%
Glucocorticoid receptor binding - 0.7939 79.39%
Aromatase binding - 0.7851 78.51%
PPAR gamma - 0.7466 74.66%
Honey bee toxicity - 0.9610 96.10%
Biodegradation - 0.5000 50.00%
Crustacea aquatic toxicity + 0.5800 58.00%
Fish aquatic toxicity + 0.9944 99.44%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 90.28% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 87.24% 96.09%
CHEMBL4208 P20618 Proteasome component C5 84.41% 90.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.23% 95.56%
CHEMBL2581 P07339 Cathepsin D 80.82% 98.95%

Cross-Links

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PubChem 5371080
NPASS NPC94721
LOTUS LTS0097224
wikiData Q27121631