Ophiorrhiza pumila
Details Top
| Internal ID | UUID643fe54e4eae7864113907 |
| Scientific name | Ophiorrhiza pumila |
| Authority | Champ. ex Benth. |
| First published in | Hooker's J. Bot. Kew Gard. Misc. 4: 169 (1852) |
General Uses Top
Suggest a correction!Scientific and model organism uses:
Ophiorrhiza pumila is used as a research organism in studies of monoterpene indole alkaloid (MIA) biosynthesis, notably in the camptothecin pathway, and for comparative phylogenetic analyses within Rubiaceae. It is maintained in sequence databases (e.g., GenBank/NCBI) and referenced as a genetic resource for pathway reconstruction and gene discovery.
Properties relevant to use:
The presence of a biosynthetic pathway capable of generating MIAs in O. pumila supports its use in elicitation studies, transcriptomic analyses of alkaloid metabolism, and root culture systems that model specialized metabolite production.
Standards and regulation:
No specific standards apply to the plant as a research taxon; standard scientific resource policies apply (e.g., NCBI data policies).
Synonyms Top
| Scientific name | Authority | First published in |
|---|---|---|
| Ophiorrhiza humilis | Y.C.Tseng | Fl. Hainan. 3: 583 (1974) |
| Ophiorrhiza inflata | Maxim. | Bull. Acad. Imp. Sci. Saint-Pétersbourg , sér. 3, 32: 488 (1888) |
| Ophiorrhiza pumila var. inflata | (Maxim.) Masam. | Trans. Nat. Hist. Soc. Formosa 29: 238. 1939 |
Common names Top
Add a new one! Suggest a correction!| Language | Common/alternative name |
|---|---|
| Japanese | チャボイナモリ |
| Chinese | 小蛇根草 |
| Chinese | 溪畔蛇根草 |
| Chinese | 白花蛇根草 |
| Chinese | 短小蛇根草 |
| Chinese | 琼崖蛇根草 |
| Chinese | 绿蛇根草 |
Germination/Propagation Top
Suggest a correction or add new data!
No germination or propagation data was added yet.
Distribution (via POWO/KEW) Top
Legend for the distribution data:
- Doubtful data
- Extinct
- Introduced
- Native
-
Asia-temperate click to expand
-
China
- China South-central
- China Southeast
- Hainan
-
Eastern Asia
- Japan
- Nansei-shoto
- Taiwan
-
China
-
Asia-tropical click to expand
-
Indo-China
- Vietnam
-
Indo-China
Links to other databases Top
Suggest others/fix!| Database | ID/link to page |
|---|---|
| World Flora Online | wfo-0000257203 |
| Tropicos | 27913302 |
| KEW | urn:lsid:ipni.org:names:758576-1 |
| The Plant List | kew-140558 |
| Open Tree Of Life | 608350 |
| NCBI Taxonomy | 157934 |
| IPNI | 758576-1 |
| iNaturalist | 504870 |
| GBIF | 5340840 |
| EOL | 1102492 |
| USDA GRIN | 468242 |
Genomes (via NCBI) Top
Below is displayed the reference genome only!
If you wish to browse all genomes for this plant click here.
If you wish to browse all genomes for this plant click here.
| Accession | Assembly | |||||
|---|---|---|---|---|---|---|
| Name | Level | Submitter | Released | Coverage | Size | |
| GCA_016586305.1 | Opu_r1.4 | Scaffold | Kazusa DNA Research Institute | 2020-12-09 | 130 | 419.71 Mb |
Scientific Literature Top
Below are displayed the latest 15 articles published in PMC (PubMed Central®) and other sources (DOI number only)!
If you wish to see all the related articles click here.
If you wish to see all the related articles click here.
Phytochemical Profile Top
Add a new one!
Below are displayed the proven (via scientific papers) natural compounds!
You can also contribute to this by clicking here.
You can also contribute to this by clicking here.
| Name | PubChem ID | Canonical SMILES | MW | Found in | Proof |
|---|---|---|---|---|---|
| > Alkaloids and derivatives / Camptothecins | |||||
| (+-)-Camptothecin | 2538 | Click to see | 348.40 | unknown |
https://doi.org/10.1016/S0040-4039(97)10404-X https://doi.org/10.1016/S0040-4039(00)95021-4 https://doi.org/10.1016/S0040-4020(02)01196-1 |
| (19S)-19-ethyl-19-hydroxy-8-methoxy-7-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-1(21),2,4(9),5,7,10,15(20)-heptaene-14,18-dione | 11028089 | Click to see | 556.50 | unknown |
https://doi.org/10.1016/S0040-4039(97)10404-X https://doi.org/10.1016/S0040-4039(00)95021-4 |
| (4S)-4-Ethyl-4-hydroxy-10-methoxy-1H-pyrano[3',4' | 494163 | Click to see CCC1(C2=C(COC1=O)C(=O)N3CC4=CC5=C(C=CC=C5OC)N=C4C3=C2)O | 378.40 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| [(2R,3R,4S,5R,6S)-3,4,5-triacetyloxy-6-[[(19S)-19-acetyloxy-19-ethyl-14,18-dioxo-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-1(21),2,4(9),5,7,10,15(20)-heptaen-8-yl]oxy]oxan-2-yl]methyl acetate | 10509193 | Click to see CCC1(C2=C(COC1=O)C(=O)N3CC4=CC5=C(C=CC=C5OC6C(C(C(C(O6)COC(=O)C)OC(=O)C)OC(=O)C)OC(=O)C)N=C4C3=C2)OC(=O)C | 736.70 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| [3,4,5-Triacetyloxy-6-[(19-acetyloxy-19-ethyl-14,18-dioxo-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-1(21),2,4(9),5,7,10,15(20)-heptaen-8-yl)oxy]oxan-2-yl]methyl acetate | 85165658 | Click to see | 736.70 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| 19-Ethyl-19-hydroxy-8-methoxy-7-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-1(21),2,4(9),5,7,10,15(20)-heptaene-14,18-dione | 14729431 | Click to see | 556.50 | unknown |
https://doi.org/10.1016/S0040-4039(00)95021-4 https://doi.org/10.1016/S0040-4039(97)10404-X |
| 9-Methoxycamptothecin | 123617 | Click to see | 378.40 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| Camptothecin | 24360 | Click to see | 348.40 | unknown |
https://doi.org/10.1016/S0040-4039(00)95021-4 https://doi.org/10.1093/PCP/PCG051 https://doi.org/10.1007/S002990100320 https://doi.org/10.1016/S0040-4039(01)80563-3 https://doi.org/10.1016/S0031-9422(97)00614-6 https://doi.org/10.1016/S0040-4039(97)10404-X https://doi.org/10.1016/S0040-4020(02)01196-1 |
| > Benzenoids / Anthracenes / Anthraquinones | |||||
| 1-Hydroxy-2-methylanthraquinone | 160817 | Click to see | 238.24 | unknown | https://doi.org/10.1016/S0031-9422(97)00614-6 |
| 2-Methylanthraquinone | 6773 | Click to see CC1=CC2=C(C=C1)C(=O)C3=CC=CC=C3C2=O | 222.24 | unknown | https://doi.org/10.1016/S0031-9422(97)00614-6 |
| > Benzenoids / Anthracenes / Anthraquinones / Hydroxyanthraquinones | |||||
| 1-Methyl-2,3-dihydroxyanthraquinone | 11391150 | Click to see | 254.24 | unknown | https://doi.org/10.1016/S0031-9422(97)00614-6 |
| 1,2-Dihydroxy-3-methoxy-4-methylanthracene-9,10-dione | 163192670 | Click to see | 284.26 | unknown | https://doi.org/10.1016/S0031-9422(97)00614-6 |
| 1,2-Dihydroxy-3-methylanthraquinone | 429241 | Click to see | 254.24 | unknown | https://doi.org/10.1016/S0031-9422(97)00614-6 |
| 2-Hydroxy-3-methylanthraquinone | 10889963 | Click to see | 238.24 | unknown | https://doi.org/10.1016/S0031-9422(97)00614-6 |
| > Lipids and lipid-like molecules / Fatty Acyls / Fatty acyl glycosides / Fatty acyl glycosides of mono- and disaccharides | |||||
| (4R)-3-(hydroxymethyl)-5,5-dimethyl-4-[(E,3R)-3-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybut-1-enyl]cyclohex-2-en-1-one | 21674142 | Click to see | 386.40 | unknown | https://doi.org/10.1016/S0040-4039(00)95021-4 |
| 3-(Hydroxymethyl)-5,5-dimethyl-4-[3-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybut-1-enyl]cyclohex-2-en-1-one | 73821784 | Click to see | 386.40 | unknown | https://doi.org/10.1016/S0040-4039(00)95021-4 |
| > Lipids and lipid-like molecules / Steroids and steroid derivatives / Cholestane steroids / Cholesterols and derivatives | |||||
| Cholesterol | 5997 | Click to see | 386.70 | unknown | https://doi.org/10.1016/S0031-9422(97)00614-6 |
| > Lipids and lipid-like molecules / Steroids and steroid derivatives / Stigmastanes and derivatives | |||||
| (-)-beta-Sitosterol | 222284 | Click to see | 414.70 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| 17-(5-ethyl-6-methylheptan-2-yl)-10,13-dimethyl-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-ol | 86821 | Click to see CCC(CCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C)C(C)C | 414.70 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| beta-Sitosterol 3-O-beta-D-galactopyranoside | 296119 | Click to see CCC(CCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)OC5C(C(C(C(O5)CO)O)O)O)C)C)C(C)C | 576.80 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| Sitogluside | 5742590 | Click to see CCC(CCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)OC5C(C(C(C(O5)CO)O)O)O)C)C)C(C)C | 576.80 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| Stigmast-5-en-3-ol | 22012 | Click to see | 414.70 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| > Organic acids and derivatives / Carboxylic acids and derivatives / Hexacarboxylic acids and derivatives | |||||
| Loganin pentaacetate | 443344 | Click to see | 600.60 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| Methyl 6-acetyloxy-7-methyl-1-[3,4,5-triacetyloxy-6-(acetyloxymethyl)oxan-2-yl]oxy-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylate | 598308 | Click to see | 600.60 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| > Organic acids and derivatives / Carboxylic acids and derivatives / Pentacarboxylic acids and derivatives | |||||
| [(2R,3S,4R,5S,6R)-3,4,5-triacetyloxy-6-[[(3S,4R,4aS)-4-ethenyl-8-oxo-4,4a,5,6-tetrahydro-3H-pyrano[3,4-c]pyran-3-yl]oxy]oxan-2-yl]methyl acetate | 162847343 | Click to see CC(=O)OCC1C(C(C(C(O1)OC2C(C3CCOC(=O)C3=CO2)C=C)OC(=O)C)OC(=O)C)OC(=O)C | 526.50 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| [3,4,5-triacetyloxy-6-[(4-ethenyl-8-oxo-4,4a,5,6-tetrahydro-3H-pyrano[3,4-c]pyran-3-yl)oxy]oxan-2-yl]methyl acetate | 13846830 | Click to see | 526.50 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| > Organic acids and derivatives / Carboxylic acids and derivatives / Tetracarboxylic acids and derivatives | |||||
| [(2R,3R,4S,5R,6S)-3,4,5-triacetyloxy-6-[[(1R,18S,19R,20S)-19-ethenyl-14-oxo-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-2,4,6,8,10,15-hexaen-18-yl]oxy]oxan-2-yl]methyl acetate | 11227637 | Click to see CC(=O)OCC1C(C(C(C(O1)OC2C(C3CC4C5=NC6=CC=CC=C6C=C5CN4C(=O)C3=CO2)C=C)OC(=O)C)OC(=O)C)OC(=O)C | 664.70 | unknown | https://doi.org/10.1016/S0040-4039(97)00858-7 |
| [(2R,3R,4S,5R,6S)-3,4,5-triacetyloxy-6-[[(1S,18S,19R,20S)-19-ethenyl-14-oxo-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-2,4,6,8,10,15-hexaen-18-yl]oxy]oxan-2-yl]methyl acetate | 15343940 | Click to see | 664.70 | unknown | https://doi.org/10.1016/S0040-4039(97)00858-7 |
| [3,4,5-Triacetyloxy-6-[(19-ethenyl-14-oxo-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-2,4,6,8,10,15-hexaen-18-yl)oxy]oxan-2-yl]methyl acetate | 72759677 | Click to see | 664.70 | unknown | https://doi.org/10.1016/S0040-4039(97)00858-7 |
| > Organic oxygen compounds / Organooxygen compounds / Alcohols and polyols / Cyclitols and derivatives / Quinic acids and derivatives | |||||
| (1R,3R,4S,5R)-Methyl 3-(3-(3,4-Dihydroxyphenyl)Acryloyloxy)-1,4,5-Trihydroxycyclohexanecarboxylate | 46230348 | Click to see | 368.30 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| 3-{[3-(3,4-Dihydroxyphenyl)prop-2-enoyl]oxy}-1,4,5-trihydroxycyclohexane-1-carboxylic acid | 348159 | Click to see C1C(C(C(CC1(C(=O)O)O)OC(=O)C=CC2=CC(=C(C=C2)O)O)O)O | 354.31 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| 3-O-Caffeoylquinic acid methyl ester | 6476139 | Click to see | 368.30 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| Chlorogenic Acid | 1794427 | Click to see C1C(C(C(CC1(C(=O)O)O)OC(=O)C=CC2=CC(=C(C=C2)O)O)O)O | 354.31 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| Methyl 3-[3-(3,4-dihydroxyphenyl)prop-2-enoyloxy]-1,4,5-trihydroxycyclohexane-1-carboxylate | 73412063 | Click to see | 368.30 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| Neochlorogenic acid | 5280633 | Click to see C1C(C(C(CC1(C(=O)O)O)OC(=O)C=CC2=CC(=C(C=C2)O)O)O)O | 354.31 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| > Organic oxygen compounds / Organooxygen compounds / Carbohydrates and carbohydrate conjugates / Glycosyl compounds / O-glycosyl compounds | |||||
| (16R,18S,19R)-19-ethenyl-16-methoxy-18-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-1(21),2,4,6,8,10,15(20)-heptaen-14-one | 101208613 | Click to see COC1C2=C(C=C3C4=NC5=CC=CC=C5C=C4CN3C2=O)C(C(O1)OC6C(C(C(C(O6)CO)O)O)O)C=C | 524.50 | unknown | https://doi.org/10.1016/S0040-4020(02)01196-1 |
| (16S,18S,19R)-19-ethenyl-16-methoxy-18-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-1(21),2,4,6,8,10,15(20)-heptaen-14-one | 11168431 | Click to see | 524.50 | unknown | https://doi.org/10.1016/S0040-4020(02)01196-1 |
| (1R,18S,19R,20S)-19-ethenyl-18-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-2,4,6,8,10,15-hexaen-14-one | 163187593 | Click to see C=CC1C2CC3C4=NC5=CC=CC=C5C=C4CN3C(=O)C2=COC1OC6C(C(C(C(O6)CO)O)O)O | 496.50 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| (1R,18S,19R,20S)-19-ethenyl-18-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-2,4,6,8,10,15-hexaen-14-one | 11420564 | Click to see C=CC1C2CC3C4=NC5=CC=CC=C5C=C4CN3C(=O)C2=COC1OC6C(C(C(C(O6)CO)O)O)O | 496.50 | unknown | https://doi.org/10.1016/S0040-4020(02)01196-1 |
| 18-[3,4,5-Trihydroxy-6-(hydroxymethyl)tetrahydropyran-2-yl]oxy-19-vinyl-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-2(11),4,6,8,15-pentaene-10,14-dione | 14440700 | Click to see | 512.50 | unknown |
https://doi.org/10.1016/S0040-4020(02)01196-1 https://doi.org/10.1016/S0040-4039(97)10404-X https://doi.org/10.1016/S0040-4039(01)80563-3 |
| 19-Ethenyl-16-methoxy-18-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-1(21),2,4,6,8,10,15(20)-heptaen-14-one | 85422536 | Click to see | 524.50 | unknown | https://doi.org/10.1016/S0040-4020(02)01196-1 |
| 19-Ethenyl-18-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,11.04,9.015,20]henicosa-2,4,6,8,10,15-hexaen-14-one | 2989 | Click to see | 496.50 | unknown |
https://doi.org/10.1016/S0040-4020(02)01196-1 https://doi.org/10.1016/S0040-4039(00)95021-4 https://doi.org/10.1016/S0040-4039(97)10404-X |
| Deoxypumiloside | 46173817 | Click to see C=CC1C2CC3C4=NC5=CC=CC=C5C=C4CN3C(=O)C2=COC1OC6C(C(C(C(O6)CO)O)O)O | 496.50 | unknown |
https://doi.org/10.1016/S0040-4039(01)80563-3 https://doi.org/10.1016/S0040-4020(02)01196-1 https://doi.org/10.1016/S0040-4039(00)95021-4 |
| Pumiloside | 10346314 | Click to see | 512.50 | unknown |
https://doi.org/10.1016/S0040-4039(01)80563-3 https://doi.org/10.1016/S0040-4020(02)01196-1 https://doi.org/10.1016/S0040-4039(97)10404-X |
| > Organoheterocyclic compounds / Indoles and derivatives / Pyridoindoles / Beta carbolines | |||||
| 3-epi-Vincosamide; Isovincoside lactam; Strictosidine lactam | 5015264 | Click to see | 498.50 | unknown |
https://doi.org/10.1016/S0040-4020(02)01196-1 https://doi.org/10.1016/S0040-4039(97)10404-X |
| Strictosamide | 10345799 | Click to see | 498.50 | unknown |
https://doi.org/10.1016/S0040-4039(97)10404-X https://doi.org/10.1016/S0040-4020(02)01196-1 |
| > Organoheterocyclic compounds / Tetrapyrroles and derivatives | |||||
| Phaeophytin A | 135421897 | Click to see CCC1=C(C2=NC1=CC3=C(C4=C(C(C(=C5C(C(C(=CC6=NC(=C2)C(=C6C)C=C)N5)C)CCC(=O)OCC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C4=N3)C(=O)OC)O)C)C | 871.20 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| Phaeophytin b | 135410870 | Click to see | 885.20 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| > Organoheterocyclic compounds / Tetrapyrroles and derivatives / Chlorins | |||||
| methyl (3R,21S,22S)-16-ethenyl-11-ethyl-12-formyl-17,21,26-trimethyl-4-oxo-22-[3-oxo-3-[(E,7R,11R)-3,7,11,15-tetramethylhexadec-2-enoxy]propyl]-7,23,24,25-tetrazahexacyclo[18.2.1.15,8.110,13.115,18.02,6]hexacosa-1,5(26),6,8,10,12,14,16,18,20(23)-decaene-3-carboxylate | 6602299 | Click to see CCC1=C2C=C3C(=C4C(=O)C(C(=C5C(C(C(=N5)C=C6C(=C(C(=CC(=C1C=O)N2)N6)C=C)C)C)CCC(=O)OCC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C4=N3)C(=O)OC)C | 885.20 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
| methyl 16-ethenyl-11-ethyl-12,17,21,26-tetramethyl-4-oxo-22-[3-oxo-3-[(E)-3,7,11,15-tetramethylhexadec-2-enoxy]propyl]-7,23,24,25-tetrazahexacyclo[18.2.1.15,8.110,13.115,18.02,6]hexacosa-1(23),2(6),5(26),7,9,11,13,15,17,19-decaene-3-carboxylate | 5351507 | Click to see | 871.20 | unknown | https://doi.org/10.1016/S0040-4039(97)10404-X |
Collections Top
| In private collections | 0 |
| In public collections | 0 |