Physordin

Details

Top
Internal ID 54e518cb-9b24-47ad-8d19-56f3087e02e7
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Diterpenoids
IUPAC Name (E,4R)-5-[(1R,3R,4aS,8aS)-3-hydroxy-5,5,8a-trimethyl-2-methylidene-3,4,4a,6,7,8-hexahydro-1H-naphthalen-1-yl]-3-methylpent-2-ene-1,4-diol
SMILES (Canonical) CC(=CCO)C(CC1C(=C)C(CC2C1(CCCC2(C)C)C)O)O
SMILES (Isomeric) C/C(=C\CO)/[C@@H](C[C@H]1C(=C)[C@@H](C[C@@H]2[C@@]1(CCCC2(C)C)C)O)O
InChI InChI=1S/C20H34O3/c1-13(7-10-21)16(22)11-15-14(2)17(23)12-18-19(3,4)8-6-9-20(15,18)5/h7,15-18,21-23H,2,6,8-12H2,1,3-5H3/b13-7+/t15-,16+,17+,18-,20+/m0/s1
InChI Key BRBJHQRWXQRMLL-PQGOTGDCSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

Top
Molecular Formula C20H34O3
Molecular Weight 322.50 g/mol
Exact Mass 322.25079494 g/mol
Topological Polar Surface Area (TPSA) 60.70 Ų
XlogP 3.50
Atomic LogP (AlogP) 3.45
H-Bond Acceptor 3
H-Bond Donor 3
Rotatable Bonds 4

Synonyms

Top
CHEMBL1173546

2D Structure

Top
2D Structure of Physordin

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9927 99.27%
Caco-2 + 0.5200 52.00%
Blood Brain Barrier + 0.6000 60.00%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.5097 50.97%
OATP2B1 inhibitior - 0.8578 85.78%
OATP1B1 inhibitior + 0.8668 86.68%
OATP1B3 inhibitior + 0.9499 94.99%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.6135 61.35%
BSEP inhibitior - 0.7558 75.58%
P-glycoprotein inhibitior - 0.8074 80.74%
P-glycoprotein substrate - 0.6971 69.71%
CYP3A4 substrate + 0.6215 62.15%
CYP2C9 substrate - 0.6284 62.84%
CYP2D6 substrate - 0.7222 72.22%
CYP3A4 inhibition - 0.5647 56.47%
CYP2C9 inhibition - 0.8839 88.39%
CYP2C19 inhibition - 0.8627 86.27%
CYP2D6 inhibition - 0.9163 91.63%
CYP1A2 inhibition - 0.8804 88.04%
CYP2C8 inhibition - 0.6974 69.74%
CYP inhibitory promiscuity - 0.7106 71.06%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.8900 89.00%
Carcinogenicity (trinary) Non-required 0.6990 69.90%
Eye corrosion - 0.9893 98.93%
Eye irritation - 0.8816 88.16%
Skin irritation - 0.5968 59.68%
Skin corrosion - 0.9643 96.43%
Ames mutagenesis - 0.7200 72.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3809 38.09%
Micronuclear - 0.9400 94.00%
Hepatotoxicity - 0.6692 66.92%
skin sensitisation - 0.6010 60.10%
Respiratory toxicity + 0.5667 56.67%
Reproductive toxicity + 0.7889 78.89%
Mitochondrial toxicity + 0.7375 73.75%
Nephrotoxicity - 0.6442 64.42%
Acute Oral Toxicity (c) III 0.8187 81.87%
Estrogen receptor binding + 0.6270 62.70%
Androgen receptor binding - 0.5478 54.78%
Thyroid receptor binding + 0.5971 59.71%
Glucocorticoid receptor binding + 0.7021 70.21%
Aromatase binding + 0.6659 66.59%
PPAR gamma + 0.5396 53.96%
Honey bee toxicity - 0.7914 79.14%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.7500 75.00%
Fish aquatic toxicity + 0.9850 98.50%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.40% 91.11%
CHEMBL253 P34972 Cannabinoid CB2 receptor 95.88% 97.25%
CHEMBL1937 Q92769 Histone deacetylase 2 91.54% 94.75%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 90.38% 96.09%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 89.15% 82.69%
CHEMBL1977 P11473 Vitamin D receptor 88.33% 99.43%
CHEMBL1994 P08235 Mineralocorticoid receptor 88.32% 100.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.58% 97.09%
CHEMBL238 Q01959 Dopamine transporter 85.44% 95.88%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 83.97% 94.45%
CHEMBL1951 P21397 Monoamine oxidase A 83.14% 91.49%
CHEMBL4227 P25090 Lipoxin A4 receptor 82.80% 100.00%
CHEMBL2581 P07339 Cathepsin D 82.25% 98.95%
CHEMBL218 P21554 Cannabinoid CB1 receptor 80.90% 96.61%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 80.09% 95.58%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Cryptomeria japonica
Libocedrus yateensis
Physalis sordida
Senecio macroglossus
Tussilago farfara

Cross-Links

Top
PubChem 46873722
NPASS NPC306727
ChEMBL CHEMBL1173546
LOTUS LTS0152527
wikiData Q104998498