nymphaeol B

Details

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Internal ID dfee8673-fc35-48e3-aca8-885f580dd883
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavans > 2-prenylated flavans > 2-prenylated flavanones
IUPAC Name (2S)-2-[2-[(2E)-3,7-dimethylocta-2,6-dienyl]-3,4-dihydroxyphenyl]-5,7-dihydroxy-2,3-dihydrochromen-4-one
SMILES (Canonical) CC(=CCCC(=CCC1=C(C=CC(=C1O)O)C2CC(=O)C3=C(C=C(C=C3O2)O)O)C)C
SMILES (Isomeric) CC(=CCC/C(=C/CC1=C(C=CC(=C1O)O)[C@@H]2CC(=O)C3=C(C=C(C=C3O2)O)O)/C)C
InChI InChI=1S/C25H28O6/c1-14(2)5-4-6-15(3)7-8-18-17(9-10-19(27)25(18)30)22-13-21(29)24-20(28)11-16(26)12-23(24)31-22/h5,7,9-12,22,26-28,30H,4,6,8,13H2,1-3H3/b15-7+/t22-/m0/s1
InChI Key ILCMVLORKWIOOH-CEMXSPGASA-N
Popularity 5 references in papers

Physical and Chemical Properties

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Molecular Formula C25H28O6
Molecular Weight 424.50 g/mol
Exact Mass 424.18858861 g/mol
Topological Polar Surface Area (TPSA) 107.00 Ų
XlogP 5.80
Atomic LogP (AlogP) 5.45
H-Bond Acceptor 6
H-Bond Donor 4
Rotatable Bonds 6

Synonyms

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CHEBI:66641
5,7,3',4'-tetrahydroxy-2'-geranylflavanone
(2S)-2-{2-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-3,4-dihydroxyphenyl}-5,7-dihydroxy-2,3-dihydro-4H-chromen-4-one
Propolin D
CHEMBL464364
SCHEMBL7794498
SCHEMBL16105776
DTXSID101318190
BDBM50478865
Q27135258
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of nymphaeol B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9501 95.01%
Caco-2 - 0.7587 75.87%
Blood Brain Barrier - 0.5250 52.50%
Human oral bioavailability - 0.6286 62.86%
Subcellular localzation Mitochondria 0.7227 72.27%
OATP2B1 inhibitior - 0.5725 57.25%
OATP1B1 inhibitior + 0.8864 88.64%
OATP1B3 inhibitior + 0.9222 92.22%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.7750 77.50%
BSEP inhibitior + 0.8041 80.41%
P-glycoprotein inhibitior + 0.6033 60.33%
P-glycoprotein substrate - 0.6948 69.48%
CYP3A4 substrate + 0.5980 59.80%
CYP2C9 substrate - 0.7979 79.79%
CYP2D6 substrate - 0.8017 80.17%
CYP3A4 inhibition - 0.6358 63.58%
CYP2C9 inhibition - 0.6077 60.77%
CYP2C19 inhibition + 0.5246 52.46%
CYP2D6 inhibition - 0.8219 82.19%
CYP1A2 inhibition + 0.7028 70.28%
CYP2C8 inhibition + 0.5517 55.17%
CYP inhibitory promiscuity - 0.5548 55.48%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.7492 74.92%
Eye corrosion - 0.9908 99.08%
Eye irritation - 0.7365 73.65%
Skin irritation - 0.7352 73.52%
Skin corrosion - 0.9308 93.08%
Ames mutagenesis + 0.5500 55.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6670 66.70%
Micronuclear - 0.8100 81.00%
Hepatotoxicity - 0.5750 57.50%
skin sensitisation - 0.7935 79.35%
Respiratory toxicity + 0.6000 60.00%
Reproductive toxicity + 0.8667 86.67%
Mitochondrial toxicity + 0.7625 76.25%
Nephrotoxicity - 0.6318 63.18%
Acute Oral Toxicity (c) III 0.4062 40.62%
Estrogen receptor binding + 0.9083 90.83%
Androgen receptor binding + 0.7476 74.76%
Thyroid receptor binding + 0.6462 64.62%
Glucocorticoid receptor binding + 0.8556 85.56%
Aromatase binding + 0.5462 54.62%
PPAR gamma + 0.8341 83.41%
Honey bee toxicity - 0.8077 80.77%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity + 0.5200 52.00%
Fish aquatic toxicity + 1.0000 100.00%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.59% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 96.88% 94.45%
CHEMBL1929 P47989 Xanthine dehydrogenase 96.75% 96.12%
CHEMBL2581 P07339 Cathepsin D 96.50% 98.95%
CHEMBL3401 O75469 Pregnane X receptor 93.52% 94.73%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 91.82% 99.23%
CHEMBL1806 P11388 DNA topoisomerase II alpha 90.93% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 90.79% 96.09%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 89.46% 99.15%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.78% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 87.54% 86.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 87.36% 95.89%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.17% 99.17%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 86.13% 90.71%
CHEMBL3830 Q2M2I8 Adaptor-associated kinase 85.21% 83.10%
CHEMBL3137262 O60341 LSD1/CoREST complex 84.68% 97.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 84.48% 100.00%
CHEMBL4769 O95749 Geranylgeranyl pyrophosphate synthetase 83.24% 92.08%
CHEMBL1163101 O75460 Serine/threonine-protein kinase/endoribonuclease IRE1 80.96% 98.11%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Artocarpus altilis
Bobgunnia madagascariensis
Calodendrum capense
Croton caudatus
Elaeocarpus fuscoides
Hernandia nymphaeifolia
Jacobaea adonidifolia
Libanothamnus occultus
Macaranga tanarius
Meconopsis horridula
Oxera splendida
Stevia eupatoria
Vitex pinnata

Cross-Links

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PubChem 10387631
NPASS NPC67396
ChEMBL CHEMBL464364
LOTUS LTS0083661
wikiData Q27135258