Methyl 2,3-didehydroaspidospermidine-3-carboxylate

Details

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Internal ID e9eec8c4-04df-4f0e-8421-7ebb2ea4976b
Taxonomy Alkaloids and derivatives > Aspidospermatan-type alkaloids
IUPAC Name methyl 12-ethyl-8,16-diazapentacyclo[10.6.1.01,9.02,7.016,19]nonadeca-2,4,6,9-tetraene-10-carboxylate
SMILES (Canonical) CCC12CCCN3C1C4(CC3)C5=CC=CC=C5NC4=C(C2)C(=O)OC
SMILES (Isomeric) CCC12CCCN3C1C4(CC3)C5=CC=CC=C5NC4=C(C2)C(=O)OC
InChI InChI=1S/C21H26N2O2/c1-3-20-9-6-11-23-12-10-21(19(20)23)15-7-4-5-8-16(15)22-17(21)14(13-20)18(24)25-2/h4-5,7-8,19,22H,3,6,9-13H2,1-2H3
InChI Key GIGFIWJRTMBSRP-UHFFFAOYSA-N
Popularity 48 references in papers

Physical and Chemical Properties

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Molecular Formula C21H26N2O2
Molecular Weight 338.40 g/mol
Exact Mass 338.199428076 g/mol
Topological Polar Surface Area (TPSA) 41.60 Ų
XlogP 3.50
Atomic LogP (AlogP) 3.45
H-Bond Acceptor 4
H-Bond Donor 1
Rotatable Bonds 2

Synonyms

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(-)-Vincadifformine
Methyl 2,3-didehydroaspidospermidine-3-carboxylate
BAS 00513802
Tabersonine, 6,7-dihydro-
Oprea1_228145
Oprea1_292497
CHEMBL1617045
GIGFIWJRTMBSRP-UHFFFAOYSA-N
HMS1607O09
AKOS000635115
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Methyl 2,3-didehydroaspidospermidine-3-carboxylate

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9783 97.83%
Caco-2 + 0.8372 83.72%
Blood Brain Barrier + 0.8000 80.00%
Human oral bioavailability - 0.5857 58.57%
Subcellular localzation Mitochondria 0.6990 69.90%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8908 89.08%
OATP1B3 inhibitior + 0.9393 93.93%
MATE1 inhibitior - 0.8009 80.09%
OCT2 inhibitior - 0.5750 57.50%
BSEP inhibitior + 0.7925 79.25%
P-glycoprotein inhibitior - 0.7618 76.18%
P-glycoprotein substrate + 0.6706 67.06%
CYP3A4 substrate + 0.6681 66.81%
CYP2C9 substrate - 0.8024 80.24%
CYP2D6 substrate - 0.8166 81.66%
CYP3A4 inhibition - 0.7474 74.74%
CYP2C9 inhibition - 0.7030 70.30%
CYP2C19 inhibition - 0.8416 84.16%
CYP2D6 inhibition + 0.7052 70.52%
CYP1A2 inhibition - 0.7102 71.02%
CYP2C8 inhibition + 0.4805 48.05%
CYP inhibitory promiscuity - 0.5924 59.24%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.6669 66.69%
Eye corrosion - 0.9871 98.71%
Eye irritation - 0.9972 99.72%
Skin irritation - 0.7666 76.66%
Skin corrosion - 0.9233 92.33%
Ames mutagenesis - 0.6566 65.66%
Human Ether-a-go-go-Related Gene inhibition + 0.7631 76.31%
Micronuclear + 0.5700 57.00%
Hepatotoxicity + 0.5533 55.33%
skin sensitisation - 0.8194 81.94%
Respiratory toxicity + 0.7222 72.22%
Reproductive toxicity + 0.8333 83.33%
Mitochondrial toxicity + 0.9125 91.25%
Nephrotoxicity - 0.5683 56.83%
Acute Oral Toxicity (c) III 0.5367 53.67%
Estrogen receptor binding - 0.5422 54.22%
Androgen receptor binding + 0.6611 66.11%
Thyroid receptor binding + 0.5296 52.96%
Glucocorticoid receptor binding + 0.6791 67.91%
Aromatase binding + 0.6074 60.74%
PPAR gamma + 0.5702 57.02%
Honey bee toxicity - 0.9258 92.58%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity + 0.5300 53.00%
Fish aquatic toxicity + 0.9843 98.43%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.90% 96.09%
CHEMBL4208 P20618 Proteasome component C5 94.80% 90.00%
CHEMBL2581 P07339 Cathepsin D 94.63% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.57% 91.11%
CHEMBL230 P35354 Cyclooxygenase-2 90.87% 89.63%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.01% 86.33%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 89.87% 93.03%
CHEMBL221 P23219 Cyclooxygenase-1 86.43% 90.17%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.14% 97.09%
CHEMBL5028 O14672 ADAM10 85.02% 97.50%
CHEMBL253 P34972 Cannabinoid CB2 receptor 84.34% 97.25%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.42% 95.56%
CHEMBL240 Q12809 HERG 83.11% 89.76%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 81.87% 91.07%
CHEMBL4227 P25090 Lipoxin A4 receptor 81.30% 100.00%
CHEMBL3430907 Q96GD4 Aurora kinase B/Inner centromere protein 80.29% 97.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Hunteria congolana
Hunteria umbellata
Kopsia arborea
Vallesia glabra
Vinca difformis
Vinca herbacea
Vinca minor

Cross-Links

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PubChem 579873
LOTUS LTS0205242
wikiData Q104252010