Gypsogenin

Details

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Internal ID 2ac61406-d818-4cf5-9736-e14e2dde0c67
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name (4aS,6aR,6aS,6bR,8aR,9S,10S,12aR,14bS)-9-formyl-10-hydroxy-2,2,6a,6b,9,12a-hexamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylic acid
SMILES (Canonical) CC1(CCC2(CCC3(C(=CCC4C3(CCC5C4(CCC(C5(C)C=O)O)C)C)C2C1)C)C(=O)O)C
SMILES (Isomeric) C[C@]12CC[C@@H]([C@@]([C@@H]1CC[C@@]3([C@@H]2CC=C4[C@]3(CC[C@@]5([C@H]4CC(CC5)(C)C)C(=O)O)C)C)(C)C=O)O
InChI InChI=1S/C30H46O4/c1-25(2)13-15-30(24(33)34)16-14-28(5)19(20(30)17-25)7-8-22-26(3)11-10-23(32)27(4,18-31)21(26)9-12-29(22,28)6/h7,18,20-23,32H,8-17H2,1-6H3,(H,33,34)/t20-,21+,22+,23-,26-,27-,28+,29+,30-/m0/s1
InChI Key QMHCWDVPABYZMC-MYPRUECHSA-N
Popularity 36 references in papers

Physical and Chemical Properties

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Molecular Formula C30H46O4
Molecular Weight 470.70 g/mol
Exact Mass 470.33960994 g/mol
Topological Polar Surface Area (TPSA) 74.60 Ų
XlogP 6.70
Atomic LogP (AlogP) 6.41
H-Bond Acceptor 3
H-Bond Donor 2
Rotatable Bonds 2

Synonyms

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Albsapogenin
Githagenin
Astrantiagenin D
Gypsophilasapogenin
639-14-5
Gypsophilasaponin
Saponin-gypsophila
(3beta,4alpha)-3-Hydroxy-23-oxoolean-12-en-28-oic acid
2A9SGC905J
CHEBI:5580
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Gypsogenin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9930 99.30%
Caco-2 - 0.5804 58.04%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability - 0.5000 50.00%
Subcellular localzation Mitochondria 0.8731 87.31%
OATP2B1 inhibitior - 0.8597 85.97%
OATP1B1 inhibitior + 0.8505 85.05%
OATP1B3 inhibitior - 0.5909 59.09%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.5571 55.71%
BSEP inhibitior + 0.9595 95.95%
P-glycoprotein inhibitior - 0.7535 75.35%
P-glycoprotein substrate - 0.8073 80.73%
CYP3A4 substrate + 0.6432 64.32%
CYP2C9 substrate - 0.6653 66.53%
CYP2D6 substrate - 0.8509 85.09%
CYP3A4 inhibition - 0.8125 81.25%
CYP2C9 inhibition - 0.9032 90.32%
CYP2C19 inhibition - 0.9375 93.75%
CYP2D6 inhibition - 0.9632 96.32%
CYP1A2 inhibition - 0.8893 88.93%
CYP2C8 inhibition - 0.6241 62.41%
CYP inhibitory promiscuity - 0.9638 96.38%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6382 63.82%
Eye corrosion - 0.9936 99.36%
Eye irritation - 0.9296 92.96%
Skin irritation + 0.6459 64.59%
Skin corrosion - 0.9480 94.80%
Ames mutagenesis - 0.8100 81.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4440 44.40%
Micronuclear - 0.7800 78.00%
Hepatotoxicity - 0.8250 82.50%
skin sensitisation - 0.5744 57.44%
Respiratory toxicity + 0.6333 63.33%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.8625 86.25%
Nephrotoxicity - 0.6809 68.09%
Acute Oral Toxicity (c) I 0.8416 84.16%
Estrogen receptor binding + 0.8147 81.47%
Androgen receptor binding + 0.6944 69.44%
Thyroid receptor binding + 0.6439 64.39%
Glucocorticoid receptor binding + 0.8427 84.27%
Aromatase binding + 0.6996 69.96%
PPAR gamma + 0.6545 65.45%
Honey bee toxicity - 0.8818 88.18%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity - 0.6700 67.00%
Fish aquatic toxicity + 0.9971 99.71%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.56% 95.56%
CHEMBL221 P23219 Cyclooxygenase-1 92.08% 90.17%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 90.56% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 89.98% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.74% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 87.34% 97.09%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 86.68% 93.00%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.43% 100.00%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 84.30% 96.77%
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 82.18% 95.17%
CHEMBL2581 P07339 Cathepsin D 81.45% 98.95%
CHEMBL5028 O14672 ADAM10 80.35% 97.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Agrostemma githago
Chenopodium quinoa
Gypsophila bicolor
Gypsophila capillaris
Gypsophila oldhamiana
Gypsophila pacifica
Psammosilene tunicoides
Quillaja saponaria
Silene firma
Stellaria media

Cross-Links

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PubChem 92825
LOTUS LTS0275378
wikiData Q20054523