Gerberinol

Details

Top
Internal ID 2824e018-0526-4f8e-bd4a-0b120292784f
Taxonomy Phenylpropanoids and polyketides > Coumarins and derivatives > Hydroxycoumarins > 4-hydroxycoumarins
IUPAC Name 4-hydroxy-3-[(4-hydroxy-5-methyl-2-oxochromen-3-yl)methyl]-5-methylchromen-2-one
SMILES (Canonical) CC1=C2C(=CC=C1)OC(=O)C(=C2O)CC3=C(C4=C(C=CC=C4OC3=O)C)O
SMILES (Isomeric) CC1=C2C(=CC=C1)OC(=O)C(=C2O)CC3=C(C4=C(C=CC=C4OC3=O)C)O
InChI InChI=1S/C21H16O6/c1-10-5-3-7-14-16(10)18(22)12(20(24)26-14)9-13-19(23)17-11(2)6-4-8-15(17)27-21(13)25/h3-8,22-23H,9H2,1-2H3
InChI Key JUCUEMBIORWHSB-UHFFFAOYSA-N
Popularity 11 references in papers

Physical and Chemical Properties

Top
Molecular Formula C21H16O6
Molecular Weight 364.30 g/mol
Exact Mass 364.09468823 g/mol
Topological Polar Surface Area (TPSA) 93.10 Ų
XlogP 3.30
Atomic LogP (AlogP) 3.52
H-Bond Acceptor 6
H-Bond Donor 2
Rotatable Bonds 2

Synonyms

Top
TDS3W7Z5QY
UNII-TDS3W7Z5QY
84153-78-6
2H-1-Benzopyran-2-one, 3,3'-methylenebis(4-hydroxy-5-methyl-
3,3'-Methylenebis(4-hydroxy-5-methyl-2H-1-benzopyran-2-one)
5-Methyl-3-((5-methyl-4-oxidanyl-2-oxidanylidene-chromen-3-yl)methyl)-4-oxidanyl-chromen-2-one
3,3'-Methylenebis[4-hydroxy-5-methyl-2H-1-benzopyran-2-one]
CHEBI:172592
DTXSID401188774
3,3'-Methylenebis[4-hydroxy-5-methyl-2H-1-benzopyran-2-one], 9CI
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of Gerberinol

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9178 91.78%
Caco-2 + 0.5793 57.93%
Blood Brain Barrier - 0.9000 90.00%
Human oral bioavailability + 0.6857 68.57%
Subcellular localzation Mitochondria 0.8552 85.52%
OATP2B1 inhibitior + 0.5704 57.04%
OATP1B1 inhibitior - 0.3573 35.73%
OATP1B3 inhibitior + 0.8894 88.94%
MATE1 inhibitior - 0.7600 76.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior - 0.6257 62.57%
P-glycoprotein inhibitior - 0.6662 66.62%
P-glycoprotein substrate - 0.9197 91.97%
CYP3A4 substrate - 0.5769 57.69%
CYP2C9 substrate + 0.7451 74.51%
CYP2D6 substrate - 0.8680 86.80%
CYP3A4 inhibition - 0.9191 91.91%
CYP2C9 inhibition + 0.7806 78.06%
CYP2C19 inhibition - 0.8210 82.10%
CYP2D6 inhibition - 0.9641 96.41%
CYP1A2 inhibition - 0.8440 84.40%
CYP2C8 inhibition - 0.8305 83.05%
CYP inhibitory promiscuity - 0.8795 87.95%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9613 96.13%
Carcinogenicity (trinary) Non-required 0.6847 68.47%
Eye corrosion - 0.9893 98.93%
Eye irritation - 0.5556 55.56%
Skin irritation - 0.6925 69.25%
Skin corrosion - 0.9545 95.45%
Ames mutagenesis + 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3766 37.66%
Micronuclear + 0.8100 81.00%
Hepatotoxicity + 0.7125 71.25%
skin sensitisation - 0.9051 90.51%
Respiratory toxicity - 0.5444 54.44%
Reproductive toxicity + 0.6667 66.67%
Mitochondrial toxicity + 0.7750 77.50%
Nephrotoxicity - 0.8126 81.26%
Acute Oral Toxicity (c) II 0.5529 55.29%
Estrogen receptor binding + 0.9129 91.29%
Androgen receptor binding - 0.4812 48.12%
Thyroid receptor binding - 0.5093 50.93%
Glucocorticoid receptor binding + 0.7381 73.81%
Aromatase binding + 0.5176 51.76%
PPAR gamma + 0.7995 79.95%
Honey bee toxicity - 0.9607 96.07%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity - 0.5400 54.00%
Fish aquatic toxicity + 0.9711 97.11%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 96.46% 98.95%
CHEMBL3401 O75469 Pregnane X receptor 96.45% 94.73%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.67% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.05% 95.56%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 90.43% 89.34%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.58% 89.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 88.41% 86.33%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 88.15% 94.00%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 84.11% 96.95%
CHEMBL5409 Q8TDU6 G-protein coupled bile acid receptor 1 84.06% 93.65%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 83.81% 99.23%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Diospyros crassiflora
Diospyros kaki
Hypericum japonicum
Leibnitzia anandria

Cross-Links

Top
PubChem 54714260
NPASS NPC30069
LOTUS LTS0076976
wikiData Q105135160