Saikogenin F 3-glucoside

Details

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Internal ID 3a2ad974-68c2-4f25-838b-a4c286c82bc3
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Triterpene glycosides > Triterpene saponins
IUPAC Name (2R,3R,4S,5S,6R)-2-[[(1S,2S,4S,5R,8R,9R,10S,13S,17S,18R)-2-hydroxy-9-(hydroxymethyl)-4,5,9,13,20,20-hexamethyl-24-oxahexacyclo[15.5.2.01,18.04,17.05,14.08,13]tetracos-15-en-10-yl]oxy]-6-(hydroxymethyl)oxane-3,4,5-triol
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C36H58O9/c1-30(2)13-14-35-19-43-36(23(35)15-30)12-8-22-31(3)10-9-25(45-29-28(42)27(41)26(40)20(17-37)44-29)32(4,18-38)21(31)7-11-33(22,5)34(36,6)16-24(35)39/h8,12,20-29,37-42H,7,9-11,13-19H2,1-6H3/t20-,21-,22?,23-,24+,25+,26-,27+,28-,29+,31+,32+,33-,34+,35-,36+/m1/s1
InChI Key FWBQWFPKLKJKLW-GUPQKMISSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C36H58O9
Molecular Weight 634.80 g/mol
Exact Mass 634.40808342 g/mol
Topological Polar Surface Area (TPSA) 149.00 Ų
XlogP 3.60
Atomic LogP (AlogP) 2.93
H-Bond Acceptor 9
H-Bond Donor 6
Rotatable Bonds 4

Synonyms

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Saikogenin F 3-glucoside
Saikogenin F 3-beta-D-glucoside
13,28-Epoxy-16,23-dihydroxyolean-11-en-3-yl-D-glucopyranoside
beta-D-Glucopyranoside, (3beta,4alpha,16beta)-13,28-epoxy-16,23-dihydroxyolean-11-en-3-yl

2D Structure

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2D Structure of Saikogenin F 3-glucoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6441 64.41%
Caco-2 - 0.8408 84.08%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Mitochondria 0.6663 66.63%
OATP2B1 inhibitior - 0.5805 58.05%
OATP1B1 inhibitior + 0.8479 84.79%
OATP1B3 inhibitior + 0.9158 91.58%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.5000 50.00%
BSEP inhibitior - 0.7140 71.40%
P-glycoprotein inhibitior + 0.7077 70.77%
P-glycoprotein substrate - 0.6285 62.85%
CYP3A4 substrate + 0.7152 71.52%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8287 82.87%
CYP3A4 inhibition - 0.9390 93.90%
CYP2C9 inhibition - 0.8634 86.34%
CYP2C19 inhibition - 0.8659 86.59%
CYP2D6 inhibition - 0.9457 94.57%
CYP1A2 inhibition - 0.9115 91.15%
CYP2C8 inhibition + 0.6340 63.40%
CYP inhibitory promiscuity - 0.9473 94.73%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6210 62.10%
Eye corrosion - 0.9900 99.00%
Eye irritation - 0.9206 92.06%
Skin irritation - 0.6612 66.12%
Skin corrosion - 0.9452 94.52%
Ames mutagenesis - 0.6370 63.70%
Human Ether-a-go-go-Related Gene inhibition + 0.7581 75.81%
Micronuclear - 0.8900 89.00%
Hepatotoxicity - 0.5814 58.14%
skin sensitisation - 0.9108 91.08%
Respiratory toxicity - 0.5222 52.22%
Reproductive toxicity + 0.6889 68.89%
Mitochondrial toxicity - 0.5875 58.75%
Nephrotoxicity + 0.4732 47.32%
Acute Oral Toxicity (c) I 0.7129 71.29%
Estrogen receptor binding + 0.5809 58.09%
Androgen receptor binding + 0.7531 75.31%
Thyroid receptor binding - 0.5386 53.86%
Glucocorticoid receptor binding + 0.5848 58.48%
Aromatase binding + 0.6477 64.77%
PPAR gamma + 0.6169 61.69%
Honey bee toxicity - 0.7057 70.57%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.6300 63.00%
Fish aquatic toxicity + 0.9152 91.52%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.84% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.57% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.60% 97.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.59% 94.45%
CHEMBL226 P30542 Adenosine A1 receptor 93.11% 95.93%
CHEMBL5608 Q16288 NT-3 growth factor receptor 90.44% 95.89%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 88.31% 95.50%
CHEMBL3714130 P46095 G-protein coupled receptor 6 87.79% 97.36%
CHEMBL1994 P08235 Mineralocorticoid receptor 87.17% 100.00%
CHEMBL4005 P42336 PI3-kinase p110-alpha subunit 84.74% 97.47%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 83.68% 92.62%
CHEMBL4685 P14902 Indoleamine 2,3-dioxygenase 80.73% 96.38%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.37% 86.33%
CHEMBL2581 P07339 Cathepsin D 80.29% 98.95%
CHEMBL241 Q14432 Phosphodiesterase 3A 80.12% 92.94%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Clinopodium chinense
Clinopodium vulgare

Cross-Links

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PubChem 124223333
LOTUS LTS0231088
wikiData Q105003078