beta-D-glucosyl-N-(dodecanoyl)sphingosine

Details

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Internal ID 62ec9ae7-e44a-4777-a392-7c1bc6ac8d58
Taxonomy Lipids and lipid-like molecules > Sphingolipids > Glycosphingolipids > Simple glycosylceramides > Glycosyl-N-acylsphingosines
IUPAC Name N-[(E,2S,3R)-3-hydroxy-1-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoctadec-4-en-2-yl]dodecanamide
SMILES (Canonical) CCCCCCCCCCCCCC=CC(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCCCCCC)O
SMILES (Isomeric) CCCCCCCCCCCCC/C=C/[C@H]([C@H](CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCCCCCC)O
InChI InChI=1S/C36H69NO8/c1-3-5-7-9-11-13-14-15-16-18-19-21-23-25-30(39)29(28-44-36-35(43)34(42)33(41)31(27-38)45-36)37-32(40)26-24-22-20-17-12-10-8-6-4-2/h23,25,29-31,33-36,38-39,41-43H,3-22,24,26-28H2,1-2H3,(H,37,40)/b25-23+/t29-,30+,31+,33+,34-,35+,36+/m0/s1
InChI Key IYCYEZLMOLRFAN-IUGLYQEMSA-N
Popularity 48 references in papers

Physical and Chemical Properties

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Molecular Formula C36H69NO8
Molecular Weight 643.90 g/mol
Exact Mass 643.50231816 g/mol
Topological Polar Surface Area (TPSA) 149.00 Ų
XlogP 9.10
Atomic LogP (AlogP) 5.83
H-Bond Acceptor 8
H-Bond Donor 6
Rotatable Bonds 29

Synonyms

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D-glucosyl--1,1' N-lauroyl-D-erythro-sphingosine
111956-48-0
C12 beta-GlcCer
beta-GlcCer (C12)
beta-GlcCer (C12:0)
C12-beta-glucosyl ceramide
CHEBI:76297
beta-D-glucosyl-N-dodecanoylsphing-4E-enine
1-O-beta-D-glucopyranosyl-N-(dodecanoyl)sphingosine
Q27145864
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of beta-D-glucosyl-N-(dodecanoyl)sphingosine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5446 54.46%
Caco-2 - 0.8678 86.78%
Blood Brain Barrier - 0.7500 75.00%
Human oral bioavailability - 0.7429 74.29%
Subcellular localzation Mitochondria 0.7599 75.99%
OATP2B1 inhibitior - 0.5651 56.51%
OATP1B1 inhibitior + 0.8044 80.44%
OATP1B3 inhibitior + 0.9225 92.25%
MATE1 inhibitior - 0.9612 96.12%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior + 0.8414 84.14%
P-glycoprotein inhibitior + 0.5976 59.76%
P-glycoprotein substrate - 0.7604 76.04%
CYP3A4 substrate + 0.6162 61.62%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8690 86.90%
CYP3A4 inhibition - 0.6831 68.31%
CYP2C9 inhibition - 0.9257 92.57%
CYP2C19 inhibition - 0.8752 87.52%
CYP2D6 inhibition - 0.8066 80.66%
CYP1A2 inhibition - 0.8743 87.43%
CYP2C8 inhibition - 0.6970 69.70%
CYP inhibitory promiscuity - 0.8687 86.87%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.7098 70.98%
Eye corrosion - 0.9902 99.02%
Eye irritation - 0.9196 91.96%
Skin irritation - 0.7583 75.83%
Skin corrosion - 0.9553 95.53%
Ames mutagenesis - 0.8900 89.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7173 71.73%
Micronuclear - 0.5100 51.00%
Hepatotoxicity - 0.8750 87.50%
skin sensitisation - 0.8789 87.89%
Respiratory toxicity - 0.6222 62.22%
Reproductive toxicity + 0.6778 67.78%
Mitochondrial toxicity + 0.7750 77.50%
Nephrotoxicity + 0.5000 50.00%
Acute Oral Toxicity (c) III 0.6732 67.32%
Estrogen receptor binding + 0.6970 69.70%
Androgen receptor binding - 0.6713 67.13%
Thyroid receptor binding - 0.6158 61.58%
Glucocorticoid receptor binding - 0.6517 65.17%
Aromatase binding + 0.5779 57.79%
PPAR gamma + 0.5594 55.94%
Honey bee toxicity - 0.8729 87.29%
Biodegradation - 0.5500 55.00%
Crustacea aquatic toxicity + 0.5334 53.34%
Fish aquatic toxicity - 0.4074 40.74%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3060 Q9Y345 Glycine transporter 2 99.18% 99.17%
CHEMBL2581 P07339 Cathepsin D 98.88% 98.95%
CHEMBL230 P35354 Cyclooxygenase-2 96.88% 89.63%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.43% 91.11%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 95.96% 97.29%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.51% 96.09%
CHEMBL2955 O95136 Sphingosine 1-phosphate receptor Edg-5 94.78% 92.86%
CHEMBL5255 O00206 Toll-like receptor 4 94.78% 92.50%
CHEMBL3359 P21462 Formyl peptide receptor 1 94.67% 93.56%
CHEMBL2265 P23141 Acyl coenzyme A:cholesterol acyltransferase 94.27% 85.94%
CHEMBL4769 O95749 Geranylgeranyl pyrophosphate synthetase 94.17% 92.08%
CHEMBL3401 O75469 Pregnane X receptor 90.84% 94.73%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 89.71% 96.47%
CHEMBL1293316 Q9HBX9 Relaxin receptor 1 88.89% 82.50%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 88.44% 96.00%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 88.30% 94.33%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 86.97% 91.24%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 86.97% 100.00%
CHEMBL4227 P25090 Lipoxin A4 receptor 86.01% 100.00%
CHEMBL221 P23219 Cyclooxygenase-1 85.75% 90.17%
CHEMBL2072 P35499 Sodium channel protein type IV alpha subunit 85.17% 92.32%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 84.99% 89.34%
CHEMBL5043 Q6P179 Endoplasmic reticulum aminopeptidase 2 84.58% 91.81%
CHEMBL3392948 Q9NP59 Solute carrier family 40 member 1 83.97% 95.00%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 83.21% 92.88%
CHEMBL299 P17252 Protein kinase C alpha 82.86% 98.03%
CHEMBL2001 Q9H244 Purinergic receptor P2Y12 82.65% 96.00%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 82.54% 95.50%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 82.21% 96.95%
CHEMBL3714130 P46095 G-protein coupled receptor 6 80.68% 97.36%
CHEMBL256 P0DMS8 Adenosine A3 receptor 80.49% 95.93%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Arisaema amurense
Arisaema erubescens
Arisaema heterophyllum
Pinellia ternata

Cross-Links

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PubChem 20057354
NPASS NPC65609