5-O-Methylembelin

Details

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Internal ID d893a707-8400-44e9-bb46-7a013fff5ed5
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbonyl compounds > Benzoquinones > P-benzoquinones
IUPAC Name 2-hydroxy-5-methoxy-3-undecylcyclohexa-2,5-diene-1,4-dione
SMILES (Canonical) CCCCCCCCCCCC1=C(C(=O)C=C(C1=O)OC)O
SMILES (Isomeric) CCCCCCCCCCCC1=C(C(=O)C=C(C1=O)OC)O
InChI InChI=1S/C18H28O4/c1-3-4-5-6-7-8-9-10-11-12-14-17(20)15(19)13-16(22-2)18(14)21/h13,20H,3-12H2,1-2H3
InChI Key KHBJLRRAMCJZLZ-UHFFFAOYSA-N
Popularity 10 references in papers

Physical and Chemical Properties

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Molecular Formula C18H28O4
Molecular Weight 308.40 g/mol
Exact Mass 308.19875937 g/mol
Topological Polar Surface Area (TPSA) 63.60 Ų
XlogP 5.70
Atomic LogP (AlogP) 4.40
H-Bond Acceptor 4
H-Bond Donor 1
Rotatable Bonds 11

Synonyms

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56005-10-8
5-O-methyl embelin
2-Hydroxy-5-methoxy-3-undecyl-1,4-benzoquinone
2-hydroxy-5-methoxy-3-undecylcyclohexa-2,5-diene-1,4-dione
2-Hydroxy-5-methoxy-3-undecyl-[1,4]benzoquinone
CHEBI:65842
2-hydroxy-5-methoxy-3-undecyl[1,4]benzoquinone
4H3R9623BA
2,5-Cyclohexadiene-1,4-dione, 2-hydroxy-5-methoxy-3-undecyl-
UNII-4H3R9623BA
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of 5-O-Methylembelin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9838 98.38%
Caco-2 + 0.6478 64.78%
Blood Brain Barrier + 0.5750 57.50%
Human oral bioavailability - 0.5714 57.14%
Subcellular localzation Mitochondria 0.8834 88.34%
OATP2B1 inhibitior - 0.8500 85.00%
OATP1B1 inhibitior + 0.9277 92.77%
OATP1B3 inhibitior + 0.9511 95.11%
MATE1 inhibitior - 0.7200 72.00%
OCT2 inhibitior - 0.6314 63.14%
BSEP inhibitior - 0.5295 52.95%
P-glycoprotein inhibitior - 0.7264 72.64%
P-glycoprotein substrate - 0.7750 77.50%
CYP3A4 substrate - 0.5410 54.10%
CYP2C9 substrate - 0.8028 80.28%
CYP2D6 substrate - 0.8660 86.60%
CYP3A4 inhibition - 0.8195 81.95%
CYP2C9 inhibition - 0.8851 88.51%
CYP2C19 inhibition - 0.7525 75.25%
CYP2D6 inhibition - 0.5652 56.52%
CYP1A2 inhibition - 0.8378 83.78%
CYP2C8 inhibition - 0.7092 70.92%
CYP inhibitory promiscuity - 0.8330 83.30%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.8586 85.86%
Carcinogenicity (trinary) Non-required 0.6761 67.61%
Eye corrosion - 0.9731 97.31%
Eye irritation + 0.8199 81.99%
Skin irritation - 0.6607 66.07%
Skin corrosion - 0.9603 96.03%
Ames mutagenesis - 0.6000 60.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5240 52.40%
Micronuclear - 0.9100 91.00%
Hepatotoxicity + 0.5359 53.59%
skin sensitisation - 0.7038 70.38%
Respiratory toxicity - 0.5667 56.67%
Reproductive toxicity + 0.5667 56.67%
Mitochondrial toxicity - 0.7000 70.00%
Nephrotoxicity + 0.7655 76.55%
Acute Oral Toxicity (c) III 0.5326 53.26%
Estrogen receptor binding + 0.7384 73.84%
Androgen receptor binding + 0.7101 71.01%
Thyroid receptor binding + 0.6828 68.28%
Glucocorticoid receptor binding + 0.5662 56.62%
Aromatase binding - 0.5655 56.55%
PPAR gamma + 0.8161 81.61%
Honey bee toxicity - 0.9703 97.03%
Biodegradation + 0.5500 55.00%
Crustacea aquatic toxicity + 0.7537 75.37%
Fish aquatic toxicity + 0.9926 99.26%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL215 P09917 Arachidonate 5-lipoxygenase 1300 nM
590 nM
270 nM
560 nM
270 nM
680 nM
680 nM
770 nM
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
PMID: 25765759
via Super-PRED
via Super-PRED
via Super-PRED
via Super-PRED
PMID: 25765759
via Super-PRED
via Super-PRED
CHEMBL3414409 Q2M385 Macrophage-expressed gene 1 protein 9100 nM
IC50
PMID: 25765759

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 97.19% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.33% 91.11%
CHEMBL4769 O95749 Geranylgeranyl pyrophosphate synthetase 91.54% 92.08%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.37% 96.09%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.60% 86.33%
CHEMBL3060 Q9Y345 Glycine transporter 2 89.24% 99.17%
CHEMBL2265 P23141 Acyl coenzyme A:cholesterol acyltransferase 89.12% 85.94%
CHEMBL230 P35354 Cyclooxygenase-2 88.72% 89.63%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 87.45% 100.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.90% 95.56%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 83.23% 99.23%
CHEMBL2885 P07451 Carbonic anhydrase III 81.78% 87.45%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 81.05% 96.00%
CHEMBL1907 P15144 Aminopeptidase N 80.06% 93.31%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Aegiceras corniculatum
Averrhoa carambola
Embelia ribes
Embelia schimperi
Glycine max
Lysimachia punctata
Myrsine africana
Oxalis erythrorhiza

Cross-Links

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PubChem 171489
NPASS NPC243272
ChEMBL CHEMBL471270
LOTUS LTS0181481
wikiData Q27134335