2-(1,1-Dimethyl-2-propenyl)-1,4,5-trihydroxy-9H-xanthen-9-one

Details

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Internal ID 351ceaf1-c8b7-4295-926d-7049a5dc8ab7
Taxonomy Organoheterocyclic compounds > Benzopyrans > 1-benzopyrans > Xanthones
IUPAC Name 1,4,5-trihydroxy-2-(2-methylbut-3-en-2-yl)xanthen-9-one
SMILES (Canonical) CC(C)(C=C)C1=CC(=C2C(=C1O)C(=O)C3=C(O2)C(=CC=C3)O)O
SMILES (Isomeric) CC(C)(C=C)C1=CC(=C2C(=C1O)C(=O)C3=C(O2)C(=CC=C3)O)O
InChI InChI=1S/C18H16O5/c1-4-18(2,3)10-8-12(20)17-13(15(10)22)14(21)9-6-5-7-11(19)16(9)23-17/h4-8,19-20,22H,1H2,2-3H3
InChI Key ZLVHCWPTRLJYOL-UHFFFAOYSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C18H16O5
Molecular Weight 312.30 g/mol
Exact Mass 312.09977361 g/mol
Topological Polar Surface Area (TPSA) 87.00 Ų
XlogP 4.40
Atomic LogP (AlogP) 3.53
H-Bond Acceptor 5
H-Bond Donor 3
Rotatable Bonds 2

Synonyms

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des-D-Garcigerrin A, 12b-hydroxy-
124676-46-6
2-(1,1-Dimethyl-2-propenyl)-1,4,5-trihydroxy-9H-xanthen-9-one
12b-Hydroxy-des-D-garcigerin
CHEMBL4097066
DTXSID20327100
NSC-631584
2-(1,1-dimethylallyl)-1,4,5-trihydroxy-xanthen-9-one

2D Structure

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2D Structure of 2-(1,1-Dimethyl-2-propenyl)-1,4,5-trihydroxy-9H-xanthen-9-one

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9821 98.21%
Caco-2 - 0.5506 55.06%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability + 0.5714 57.14%
Subcellular localzation Mitochondria 0.7347 73.47%
OATP2B1 inhibitior - 0.5631 56.31%
OATP1B1 inhibitior + 0.9066 90.66%
OATP1B3 inhibitior + 0.9807 98.07%
MATE1 inhibitior - 0.6200 62.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior - 0.6353 63.53%
P-glycoprotein inhibitior - 0.5973 59.73%
P-glycoprotein substrate - 0.8089 80.89%
CYP3A4 substrate + 0.5768 57.68%
CYP2C9 substrate - 0.6117 61.17%
CYP2D6 substrate - 0.8621 86.21%
CYP3A4 inhibition + 0.6077 60.77%
CYP2C9 inhibition + 0.6452 64.52%
CYP2C19 inhibition + 0.6306 63.06%
CYP2D6 inhibition - 0.7654 76.54%
CYP1A2 inhibition + 0.7777 77.77%
CYP2C8 inhibition + 0.4568 45.68%
CYP inhibitory promiscuity + 0.5878 58.78%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6247 62.47%
Eye corrosion - 0.9860 98.60%
Eye irritation + 0.8483 84.83%
Skin irritation - 0.6424 64.24%
Skin corrosion - 0.8510 85.10%
Ames mutagenesis + 0.6900 69.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5820 58.20%
Micronuclear + 0.7300 73.00%
Hepatotoxicity + 0.6500 65.00%
skin sensitisation - 0.6257 62.57%
Respiratory toxicity + 0.5889 58.89%
Reproductive toxicity + 0.7111 71.11%
Mitochondrial toxicity - 0.5500 55.00%
Nephrotoxicity - 0.7320 73.20%
Acute Oral Toxicity (c) III 0.6911 69.11%
Estrogen receptor binding + 0.7579 75.79%
Androgen receptor binding + 0.6390 63.90%
Thyroid receptor binding + 0.6859 68.59%
Glucocorticoid receptor binding + 0.8915 89.15%
Aromatase binding + 0.8142 81.42%
PPAR gamma + 0.8386 83.86%
Honey bee toxicity - 0.8704 87.04%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity - 0.5200 52.00%
Fish aquatic toxicity + 0.9888 98.88%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.51% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 97.70% 95.56%
CHEMBL2581 P07339 Cathepsin D 96.49% 98.95%
CHEMBL3401 O75469 Pregnane X receptor 96.02% 94.73%
CHEMBL1806 P11388 DNA topoisomerase II alpha 94.75% 89.00%
CHEMBL1951 P21397 Monoamine oxidase A 93.69% 91.49%
CHEMBL3192 Q9BY41 Histone deacetylase 8 92.91% 93.99%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.35% 86.33%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 89.10% 83.57%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 88.24% 94.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 87.37% 99.23%
CHEMBL5409 Q8TDU6 G-protein coupled bile acid receptor 1 86.95% 93.65%
CHEMBL4530 P00488 Coagulation factor XIII 83.99% 96.00%
CHEMBL1937 Q92769 Histone deacetylase 2 81.33% 94.75%

Cross-Links

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PubChem 364825
NPASS NPC205772
LOTUS LTS0077726
wikiData Q82088477