1-Deoxynojirimycin

Details

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Internal ID ecbaa4f3-3faf-4615-97f3-f7da6df8fcf8
Taxonomy Organoheterocyclic compounds > Piperidines
IUPAC Name (2R,3R,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol
SMILES (Canonical) C1C(C(C(C(N1)CO)O)O)O
SMILES (Isomeric) C1[C@@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O
InChI InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5-,6-/m1/s1
InChI Key LXBIFEVIBLOUGU-JGWLITMVSA-N
Popularity 1,675 references in papers

Physical and Chemical Properties

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Molecular Formula C6H13NO4
Molecular Weight 163.17 g/mol
Exact Mass 163.08445790 g/mol
Topological Polar Surface Area (TPSA) 93.00 Ų
XlogP -2.30
Atomic LogP (AlogP) -2.97
H-Bond Acceptor 5
H-Bond Donor 5
Rotatable Bonds 1

Synonyms

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19130-96-2
DUVOGLUSTAT
Moranoline
deoxynojirimycin
(2R,3R,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol
Moranolin
1 Deoxynojirimycin
1,5-Deoxy-1,5-imino-D-mannitol
D-1-deoxynojirimycin
1,5-Dideoxy-1,5-imino-D-glucitol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of 1-Deoxynojirimycin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5860 58.60%
Caco-2 - 0.9638 96.38%
Blood Brain Barrier - 0.7000 70.00%
Human oral bioavailability + 0.6571 65.71%
Subcellular localzation Mitochondria 0.5069 50.69%
OATP2B1 inhibitior - 0.8513 85.13%
OATP1B1 inhibitior + 0.9687 96.87%
OATP1B3 inhibitior + 0.9464 94.64%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior - 0.9703 97.03%
P-glycoprotein inhibitior - 0.9809 98.09%
P-glycoprotein substrate - 0.9003 90.03%
CYP3A4 substrate - 0.6978 69.78%
CYP2C9 substrate - 0.8129 81.29%
CYP2D6 substrate + 0.4032 40.32%
CYP3A4 inhibition - 0.9886 98.86%
CYP2C9 inhibition - 0.9543 95.43%
CYP2C19 inhibition - 0.9671 96.71%
CYP2D6 inhibition - 0.9230 92.30%
CYP1A2 inhibition - 0.9401 94.01%
CYP2C8 inhibition - 0.9700 97.00%
CYP inhibitory promiscuity - 0.9896 98.96%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.7115 71.15%
Eye corrosion - 0.9673 96.73%
Eye irritation - 0.9129 91.29%
Skin irritation - 0.7356 73.56%
Skin corrosion - 0.8573 85.73%
Ames mutagenesis + 0.5900 59.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5594 55.94%
Micronuclear + 0.5700 57.00%
Hepatotoxicity - 0.7410 74.10%
skin sensitisation - 0.8770 87.70%
Respiratory toxicity - 0.7333 73.33%
Reproductive toxicity + 0.6556 65.56%
Mitochondrial toxicity + 0.7750 77.50%
Nephrotoxicity - 0.6667 66.67%
Acute Oral Toxicity (c) III 0.8044 80.44%
Estrogen receptor binding - 0.8814 88.14%
Androgen receptor binding - 0.8849 88.49%
Thyroid receptor binding - 0.7648 76.48%
Glucocorticoid receptor binding - 0.7670 76.70%
Aromatase binding - 0.8263 82.63%
PPAR gamma - 0.8627 86.27%
Honey bee toxicity - 0.9278 92.78%
Biodegradation + 0.8500 85.00%
Crustacea aquatic toxicity - 0.8200 82.00%
Fish aquatic toxicity - 0.9926 99.26%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL2524 P06280 Alpha-galactosidase A 18000 nM
13 nM
Ki
IC50
PMID: 14684301
via Super-PRED
CHEMBL4176 P04066 Alpha-L-fucosidase I 26000 nM
IC50
PMID: 7966130
CHEMBL2179 P04062 Beta-glucocerebrosidase 240000 nM
195000 nM
118000 nM
IC50
IC50
IC50
PMID: 18595718
PMID: 23106358
DOI: 10.1016/S0960-894X(01)80688-0
CHEMBL5272 P35573 Glycogen debranching enzyme 10000 nM
IC50
PMID: 20000679
CHEMBL2608 P10253 Lysosomal alpha-glucosidase 82.3 nM
36.6 nM
1000 nM
1500 nM
1500 nM
60 nM
Potency
Potency
IC50
IC50
IC50
IC50
via Super-PRED
via Super-PRED
PMID: 18595718
PMID: 20000679
PMID: 19853441
PMID: 18595718
CHEMBL2074 O43451 Maltase-glucoamylase 40 nM
40 nM
360 nM
IC50
IC50
IC50
PMID: 15771446
via Super-PRED
PMID: 7608901
CHEMBL2748 P14410 Sucrase-isomaltase 2000 nM
IC50
PMID: 20000679

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3137262 O60341 LSD1/CoREST complex 94.10% 97.09%
CHEMBL4040 P28482 MAP kinase ERK2 92.70% 83.82%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 92.39% 96.09%
CHEMBL1907589 P17787 Neuronal acetylcholine receptor; alpha4/beta2 90.52% 94.55%
CHEMBL253 P34972 Cannabinoid CB2 receptor 88.89% 97.25%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 84.83% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 84.03% 94.45%
CHEMBL226 P30542 Adenosine A1 receptor 82.32% 95.93%

Plants that contains it

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Cross-Links

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PubChem 29435
NPASS NPC306462
ChEMBL CHEMBL307429
LOTUS LTS0004153
wikiData Q15274561