Virginiae butanolide A

Details

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Internal ID 66aad291-9e39-4f80-a37e-1c3f262d2cee
Taxonomy Lipids and lipid-like molecules > Fatty Acyls > Fatty alcohols
IUPAC Name (3R,4R)-4-(hydroxymethyl)-3-[(1S)-1-hydroxy-5-methylhexyl]oxolan-2-one
SMILES (Canonical) CC(C)CCCC(C1C(COC1=O)CO)O
SMILES (Isomeric) CC(C)CCC[C@@H]([C@H]1[C@@H](COC1=O)CO)O
InChI InChI=1S/C12H22O4/c1-8(2)4-3-5-10(14)11-9(6-13)7-16-12(11)15/h8-11,13-14H,3-7H2,1-2H3/t9-,10+,11-/m1/s1
InChI Key MZARLLPKPUWXEX-OUAUKWLOSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C12H22O4
Molecular Weight 230.30 g/mol
Exact Mass 230.15180918 g/mol
Topological Polar Surface Area (TPSA) 66.80 Ų
XlogP 2.00
Atomic LogP (AlogP) 0.96
H-Bond Acceptor 4
H-Bond Donor 2
Rotatable Bonds 6

Synonyms

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VB-A
(3R)-3-[(1S)-1-hydroxy-5-methylhexyl]-4-(hydroxymethyl)oxolan-2-one

2D Structure

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2D Structure of Virginiae butanolide A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9039 90.39%
Caco-2 - 0.6986 69.86%
Blood Brain Barrier + 0.6250 62.50%
Human oral bioavailability + 0.5857 58.57%
Subcellular localzation Mitochondria 0.7422 74.22%
OATP2B1 inhibitior - 0.8491 84.91%
OATP1B1 inhibitior + 0.9565 95.65%
OATP1B3 inhibitior + 0.9429 94.29%
MATE1 inhibitior - 0.9612 96.12%
OCT2 inhibitior - 0.7750 77.50%
BSEP inhibitior - 0.8584 85.84%
P-glycoprotein inhibitior - 0.9554 95.54%
P-glycoprotein substrate - 0.6976 69.76%
CYP3A4 substrate - 0.5613 56.13%
CYP2C9 substrate - 0.7874 78.74%
CYP2D6 substrate - 0.8540 85.40%
CYP3A4 inhibition - 0.8487 84.87%
CYP2C9 inhibition - 0.9023 90.23%
CYP2C19 inhibition - 0.9175 91.75%
CYP2D6 inhibition - 0.9437 94.37%
CYP1A2 inhibition - 0.8826 88.26%
CYP2C8 inhibition - 0.9868 98.68%
CYP inhibitory promiscuity - 0.9712 97.12%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.7151 71.51%
Eye corrosion - 0.9829 98.29%
Eye irritation - 0.6378 63.78%
Skin irritation - 0.7516 75.16%
Skin corrosion - 0.9420 94.20%
Ames mutagenesis - 0.6000 60.00%
Human Ether-a-go-go-Related Gene inhibition - 0.7460 74.60%
Micronuclear - 0.9500 95.00%
Hepatotoxicity - 0.5070 50.70%
skin sensitisation - 0.9038 90.38%
Respiratory toxicity - 0.5667 56.67%
Reproductive toxicity - 0.6941 69.41%
Mitochondrial toxicity - 0.5125 51.25%
Nephrotoxicity - 0.5755 57.55%
Acute Oral Toxicity (c) III 0.5284 52.84%
Estrogen receptor binding - 0.7589 75.89%
Androgen receptor binding - 0.5744 57.44%
Thyroid receptor binding - 0.6169 61.69%
Glucocorticoid receptor binding + 0.5585 55.85%
Aromatase binding - 0.7531 75.31%
PPAR gamma - 0.7391 73.91%
Honey bee toxicity - 0.9639 96.39%
Biodegradation - 0.6250 62.50%
Crustacea aquatic toxicity - 0.8200 82.00%
Fish aquatic toxicity - 0.3666 36.66%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 95.82% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.11% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 91.07% 91.11%
CHEMBL3401 O75469 Pregnane X receptor 89.26% 94.73%
CHEMBL3137262 O60341 LSD1/CoREST complex 86.05% 97.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.98% 95.56%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 84.94% 85.14%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 83.28% 96.47%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 82.77% 94.45%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 82.70% 86.92%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 82.19% 95.89%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 82.07% 97.29%
CHEMBL1907 P15144 Aminopeptidase N 82.01% 93.31%
CHEMBL3359 P21462 Formyl peptide receptor 1 80.67% 93.56%
CHEMBL1994 P08235 Mineralocorticoid receptor 80.53% 100.00%
CHEMBL253 P34972 Cannabinoid CB2 receptor 80.02% 97.25%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 80.01% 90.71%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Allium ampeloprasum
Artemisia gmelinii
Drimia altissima
Helenium amarum
Scutellaria viscidula
Senecio retrorsus
Taxus wallichiana

Cross-Links

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PubChem 10036830
NPASS NPC80175
LOTUS LTS0073402
wikiData Q77370040