Vincosamide

Details

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Internal ID f6c763b4-2dbf-4e63-99de-71a14683e5af
Taxonomy Organoheterocyclic compounds > Indoles and derivatives > Pyridoindoles > Beta carbolines
IUPAC Name (1R,18S,19R,20S)-19-ethenyl-18-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,10.04,9.015,20]henicosa-2(10),4,6,8,15-pentaen-14-one
SMILES (Canonical) C=CC1C2CC3C4=C(CCN3C(=O)C2=COC1OC5C(C(C(C(O5)CO)O)O)O)C6=CC=CC=C6N4
SMILES (Isomeric) C=C[C@@H]1[C@@H]2C[C@@H]3C4=C(CCN3C(=O)C2=CO[C@H]1O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)C6=CC=CC=C6N4
InChI InChI=1S/C26H30N2O8/c1-2-12-15-9-18-20-14(13-5-3-4-6-17(13)27-20)7-8-28(18)24(33)16(15)11-34-25(12)36-26-23(32)22(31)21(30)19(10-29)35-26/h2-6,11-12,15,18-19,21-23,25-27,29-32H,1,7-10H2/t12-,15+,18-,19-,21-,22+,23-,25+,26+/m1/s1
InChI Key LBRPLJCNRZUXLS-AZVRXDBZSA-N
Popularity 7 references in papers

Physical and Chemical Properties

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Molecular Formula C26H30N2O8
Molecular Weight 498.50 g/mol
Exact Mass 498.20021592 g/mol
Topological Polar Surface Area (TPSA) 145.00 Ų
XlogP 0.40
Atomic LogP (AlogP) 0.47
H-Bond Acceptor 8
H-Bond Donor 5
Rotatable Bonds 4

Synonyms

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23141-27-7
CHEMBL4447303
(1R,18S,19R,20S)-19-Ethenyl-18-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-17-oxa-3,13-diazapentacyclo[11.8.0.02,10.04,9.015,20]henicosa-2(10),4,6,8,15-pentaen-14-one
Vincoside lactam
CHEBI:141963
DTXSID601316670
HY-N1089
YAA14127
BDBM50531280
AKOS032961753
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Vincosamide

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7827 78.27%
Caco-2 - 0.8133 81.33%
Blood Brain Barrier - 0.7250 72.50%
Human oral bioavailability - 0.9000 90.00%
Subcellular localzation Mitochondria 0.6577 65.77%
OATP2B1 inhibitior - 0.8550 85.50%
OATP1B1 inhibitior + 0.8238 82.38%
OATP1B3 inhibitior + 0.9292 92.92%
MATE1 inhibitior - 0.8600 86.00%
OCT2 inhibitior - 0.7750 77.50%
BSEP inhibitior + 0.8866 88.66%
P-glycoprotein inhibitior - 0.4721 47.21%
P-glycoprotein substrate - 0.5728 57.28%
CYP3A4 substrate + 0.7074 70.74%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8444 84.44%
CYP3A4 inhibition - 0.8150 81.50%
CYP2C9 inhibition - 0.8298 82.98%
CYP2C19 inhibition - 0.8622 86.22%
CYP2D6 inhibition - 0.8675 86.75%
CYP1A2 inhibition - 0.6385 63.85%
CYP2C8 inhibition + 0.6038 60.38%
CYP inhibitory promiscuity - 0.6866 68.66%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.5753 57.53%
Eye corrosion - 0.9860 98.60%
Eye irritation - 0.9579 95.79%
Skin irritation - 0.7583 75.83%
Skin corrosion - 0.9330 93.30%
Ames mutagenesis + 0.5500 55.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8049 80.49%
Micronuclear + 0.8700 87.00%
Hepatotoxicity - 0.5817 58.17%
skin sensitisation - 0.8630 86.30%
Respiratory toxicity + 0.9222 92.22%
Reproductive toxicity + 0.9222 92.22%
Mitochondrial toxicity + 0.9375 93.75%
Nephrotoxicity - 0.7422 74.22%
Acute Oral Toxicity (c) III 0.5743 57.43%
Estrogen receptor binding + 0.8387 83.87%
Androgen receptor binding + 0.6892 68.92%
Thyroid receptor binding + 0.6029 60.29%
Glucocorticoid receptor binding + 0.5378 53.78%
Aromatase binding - 0.5000 50.00%
PPAR gamma + 0.6577 65.77%
Honey bee toxicity - 0.7485 74.85%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.6100 61.00%
Fish aquatic toxicity + 0.8832 88.32%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.80% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 97.62% 91.49%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 97.14% 95.56%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.65% 96.09%
CHEMBL2581 P07339 Cathepsin D 95.14% 98.95%
CHEMBL1806 P11388 DNA topoisomerase II alpha 93.53% 89.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.39% 97.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 91.88% 94.45%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 90.48% 86.92%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 88.96% 95.83%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 85.54% 99.23%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 85.06% 85.14%
CHEMBL3310 Q96DB2 Histone deacetylase 11 84.81% 88.56%
CHEMBL5103 Q969S8 Histone deacetylase 10 83.78% 90.08%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 83.39% 91.71%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.05% 86.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.84% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Camptotheca acuminata
Cephalanthus occidentalis
Cornus walteri
Koompassia malaccensis
Nauclea orientalis
Uncaria rhynchophylla

Cross-Links

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PubChem 10163855
NPASS NPC227138
LOTUS LTS0176391
wikiData Q105149592