Vincarodine

Details

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Internal ID c46d8041-62b9-4e32-959e-0311eb94cc01
Taxonomy Alkaloids and derivatives > Indolonaphthyridine alkaloids
IUPAC Name methyl 20-ethyl-15-hydroxy-6-methoxy-17-oxa-3,13-diazahexacyclo[11.7.0.02,10.03,18.04,9.016,20]icosa-2(10),4(9),5,7-tetraene-18-carboxylate
SMILES (Canonical) CCC12CC3(N4C5=C(C=CC(=C5)OC)C6=C4C1N(CC6)CC(C2O3)O)C(=O)OC
SMILES (Isomeric) CCC12CC3(N4C5=C(C=CC(=C5)OC)C6=C4C1N(CC6)CC(C2O3)O)C(=O)OC
InChI InChI=1S/C22H26N2O5/c1-4-21-11-22(20(26)28-3)24-15-9-12(27-2)5-6-13(15)14-7-8-23(18(21)17(14)24)10-16(25)19(21)29-22/h5-6,9,16,18-19,25H,4,7-8,10-11H2,1-3H3
InChI Key DFVNOPYNGMIZGL-UHFFFAOYSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C22H26N2O5
Molecular Weight 398.50 g/mol
Exact Mass 398.18417193 g/mol
Topological Polar Surface Area (TPSA) 73.20 Ų
XlogP 1.90
Atomic LogP (AlogP) 1.95
H-Bond Acceptor 7
H-Bond Donor 1
Rotatable Bonds 3

Synonyms

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NSC169705
NSC-169705
methyl 20-ethyl-15-hydroxy-6-methoxy-17-oxa-3,13-diazahexacyclo[11.7.0.02,10.03,18.04,9.016,20]icosa-2(10),4(9),5,7-tetraene-18-carboxylate

2D Structure

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2D Structure of Vincarodine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8487 84.87%
Caco-2 + 0.7141 71.41%
Blood Brain Barrier + 0.7000 70.00%
Human oral bioavailability - 0.6429 64.29%
Subcellular localzation Lysosomes 0.6591 65.91%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9210 92.10%
OATP1B3 inhibitior + 0.9369 93.69%
MATE1 inhibitior - 0.7400 74.00%
OCT2 inhibitior - 0.7500 75.00%
BSEP inhibitior + 0.9002 90.02%
P-glycoprotein inhibitior - 0.5173 51.73%
P-glycoprotein substrate + 0.7172 71.72%
CYP3A4 substrate + 0.6645 66.45%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.4945 49.45%
CYP3A4 inhibition - 0.7093 70.93%
CYP2C9 inhibition - 0.8753 87.53%
CYP2C19 inhibition - 0.7703 77.03%
CYP2D6 inhibition - 0.5258 52.58%
CYP1A2 inhibition - 0.8595 85.95%
CYP2C8 inhibition + 0.4803 48.03%
CYP inhibitory promiscuity - 0.5382 53.82%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.6556 65.56%
Eye corrosion - 0.9900 99.00%
Eye irritation - 0.9814 98.14%
Skin irritation - 0.8003 80.03%
Skin corrosion - 0.9406 94.06%
Ames mutagenesis - 0.5078 50.78%
Human Ether-a-go-go-Related Gene inhibition - 0.3633 36.33%
Micronuclear + 0.6700 67.00%
Hepatotoxicity + 0.6285 62.85%
skin sensitisation - 0.8752 87.52%
Respiratory toxicity + 0.8556 85.56%
Reproductive toxicity + 0.9556 95.56%
Mitochondrial toxicity + 0.9250 92.50%
Nephrotoxicity - 0.7666 76.66%
Acute Oral Toxicity (c) III 0.6699 66.99%
Estrogen receptor binding + 0.7597 75.97%
Androgen receptor binding + 0.7059 70.59%
Thyroid receptor binding + 0.5198 51.98%
Glucocorticoid receptor binding + 0.8273 82.73%
Aromatase binding + 0.6914 69.14%
PPAR gamma + 0.5644 56.44%
Honey bee toxicity - 0.8431 84.31%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.6400 64.00%
Fish aquatic toxicity + 0.6465 64.65%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 99.15% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.52% 91.11%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 97.26% 85.14%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.20% 94.45%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.36% 95.56%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.82% 94.00%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 89.30% 95.89%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 89.26% 92.62%
CHEMBL4208 P20618 Proteasome component C5 86.84% 90.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.83% 86.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.54% 95.89%
CHEMBL2581 P07339 Cathepsin D 85.43% 98.95%
CHEMBL1806 P11388 DNA topoisomerase II alpha 83.21% 89.00%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 82.58% 95.83%
CHEMBL2535 P11166 Glucose transporter 82.12% 98.75%
CHEMBL3137262 O60341 LSD1/CoREST complex 81.37% 97.09%
CHEMBL340 P08684 Cytochrome P450 3A4 80.57% 91.19%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Catharanthus roseus

Cross-Links

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PubChem 298042
LOTUS LTS0256380
wikiData Q104396391