Verrucosidin

Details

Top
Internal ID 339190c8-4a05-4860-8fa7-02691fae2c55
Taxonomy Organoheterocyclic compounds > Pyrans > Pyranones and derivatives
IUPAC Name 4-methoxy-3,5-dimethyl-6-[(2R,3S)-2-methyl-3-[(2E,4E)-4-methyl-5-[(1S,2S,4R,5R)-2,4,5-trimethyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]penta-2,4-dien-2-yl]oxiran-2-yl]pyran-2-one
SMILES (Canonical) CC1C2(C(O2)C(O1)(C)C=C(C)C=C(C)C3C(O3)(C)C4=C(C(=C(C(=O)O4)C)OC)C)C
SMILES (Isomeric) C[C@@H]1[C@@]2([C@@H](O2)[C@](O1)(C)/C=C(\C)/C=C(\C)/[C@H]3[C@](O3)(C)C4=C(C(=C(C(=O)O4)C)OC)C)C
InChI InChI=1S/C24H32O6/c1-12(11-22(6)21-23(7,30-21)16(5)28-22)10-13(2)18-24(8,29-18)19-14(3)17(26-9)15(4)20(25)27-19/h10-11,16,18,21H,1-9H3/b12-11+,13-10+/t16-,18+,21+,22+,23-,24-/m1/s1
InChI Key JSVLNARHSWZARV-FOOXNAEUSA-N
Popularity 24 references in papers

Physical and Chemical Properties

Top
Molecular Formula C24H32O6
Molecular Weight 416.50 g/mol
Exact Mass 416.21988874 g/mol
Topological Polar Surface Area (TPSA) 69.80 Ų
XlogP 2.90
Atomic LogP (AlogP) 4.11
H-Bond Acceptor 6
H-Bond Donor 0
Rotatable Bonds 5

Synonyms

Top
88389-71-3
4-methoxy-3,5-dimethyl-6-[(2R,3S)-2-methyl-3-[(2E,4E)-4-methyl-5-[(1S,2S,4R,5R)-2,4,5-trimethyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]penta-2,4-dien-2-yl]oxiran-2-yl]pyran-2-one
SCHEMBL846397
CHEMBL512656
DTXSID701045464
Q15427942
2H-Pyran-2-one, 6-(3-(1,3-dimethyl-4-(2,4,5-trimethyl-3,6-dioxabicyclo(3.1.0)hex-2-yl)-1,3-butadienyl)-2-methyloxiranyl)-4-methoxy-3,5-dimethyl-, (1S-(1alpha,2alpha(1E(2S*,3R*),4alpha,5alpha)))-
D-Altritol, 2,5:3,4-dianhydro-1,6-dideoxy-2-C-((1E,3E)-4-((2S,3R)-3-(4-methoxy-3,5-dimethyl-2-oxo-2H-pyran-6-yl)-3-methyloxiranyl)-2-methyl-1,3-pentadienyl)-4-C-methyl-

2D Structure

Top
2D Structure of Verrucosidin

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9883 98.83%
Caco-2 - 0.5467 54.67%
Blood Brain Barrier + 0.7000 70.00%
Human oral bioavailability + 0.5429 54.29%
Subcellular localzation Mitochondria 0.7402 74.02%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8875 88.75%
OATP1B3 inhibitior + 0.9393 93.93%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior + 0.8401 84.01%
P-glycoprotein inhibitior + 0.7315 73.15%
P-glycoprotein substrate - 0.6363 63.63%
CYP3A4 substrate + 0.6543 65.43%
CYP2C9 substrate - 0.6491 64.91%
CYP2D6 substrate - 0.8524 85.24%
CYP3A4 inhibition + 0.8486 84.86%
CYP2C9 inhibition - 0.7265 72.65%
CYP2C19 inhibition + 0.8755 87.55%
CYP2D6 inhibition - 0.8799 87.99%
CYP1A2 inhibition - 0.7096 70.96%
CYP2C8 inhibition - 0.6050 60.50%
CYP inhibitory promiscuity + 0.8716 87.16%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Danger 0.5878 58.78%
Eye corrosion - 0.9804 98.04%
Eye irritation - 0.8163 81.63%
Skin irritation - 0.7535 75.35%
Skin corrosion - 0.9583 95.83%
Ames mutagenesis - 0.5054 50.54%
Human Ether-a-go-go-Related Gene inhibition + 0.6668 66.68%
Micronuclear + 0.6200 62.00%
Hepatotoxicity - 0.5875 58.75%
skin sensitisation - 0.7574 75.74%
Respiratory toxicity - 0.5444 54.44%
Reproductive toxicity + 0.7444 74.44%
Mitochondrial toxicity - 0.5250 52.50%
Nephrotoxicity - 0.7927 79.27%
Acute Oral Toxicity (c) III 0.4314 43.14%
Estrogen receptor binding + 0.8517 85.17%
Androgen receptor binding + 0.6786 67.86%
Thyroid receptor binding + 0.6933 69.33%
Glucocorticoid receptor binding + 0.7126 71.26%
Aromatase binding + 0.6458 64.58%
PPAR gamma + 0.8753 87.53%
Honey bee toxicity - 0.7756 77.56%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity + 0.5200 52.00%
Fish aquatic toxicity + 0.9744 97.44%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.40% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.25% 94.45%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 90.87% 95.56%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 87.09% 99.23%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 86.84% 94.00%
CHEMBL2039 P27338 Monoamine oxidase B 86.25% 92.51%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 85.95% 85.14%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 85.91% 91.07%
CHEMBL3572 P11597 Cholesteryl ester transfer protein 85.58% 92.67%
CHEMBL1871 P10275 Androgen Receptor 84.86% 96.43%
CHEMBL4224 P49759 Dual specificty protein kinase CLK1 84.59% 85.30%
CHEMBL1806 P11388 DNA topoisomerase II alpha 82.09% 89.00%
CHEMBL3401 O75469 Pregnane X receptor 81.51% 94.73%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 80.89% 97.14%
CHEMBL2581 P07339 Cathepsin D 80.75% 98.95%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Callicarpa pilosissima
Fritillaria unibracteata
Senna obtusifolia

Cross-Links

Top
PubChem 6437365
NPASS NPC271632
LOTUS LTS0247121
wikiData Q15427942