Vernodalidimer A

Details

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Internal ID a95a975a-ec6d-4732-931c-ff2b538ab3c4
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Pentacarboxylic acids and derivatives
IUPAC Name [(3aS,4R,5aS,9aS,9bS)-5a-ethenyl-3,9-dimethylidene-2,8-dioxo-3a,4,5,6,9a,9b-hexahydrofuro[2,3-f]isochromen-4-yl] (1R,4S,6R,7S,11S,12R,13S,16R)-4-ethenyl-6-[2-(hydroxymethyl)prop-2-enoyloxy]-8-methylidene-9-oxo-2,10,18,19-tetraoxapentacyclo[14.2.1.01,13.04,12.07,11]nonadecane-16-carboxylate
SMILES (Canonical) C=CC12CC(C3C(C1C4CCC5(COC4(O5)OC2)C(=O)OC6CC7(COC(=O)C(=C)C7C8C6C(=C)C(=O)O8)C=C)OC(=O)C3=C)OC(=O)C(=C)CO
SMILES (Isomeric) C=C[C@@]12C[C@H]([C@H]3[C@H]([C@@H]1[C@@H]4CC[C@@]5(CO[C@]4(O5)OC2)C(=O)O[C@@H]6C[C@]7(COC(=O)C(=C)[C@H]7[C@H]8[C@H]6C(=C)C(=O)O8)C=C)OC(=O)C3=C)OC(=O)C(=C)CO
InChI InChI=1S/C38H40O14/c1-7-35-12-23(25-19(5)32(42)50-28(25)26(35)20(6)31(41)45-14-35)49-34(44)37-10-9-21-27-29-24(18(4)33(43)51-29)22(48-30(40)17(3)13-39)11-36(27,8-2)15-46-38(21,52-37)47-16-37/h7-8,21-29,39H,1-6,9-16H2/t21-,22+,23+,24-,25-,26-,27-,28+,29+,35-,36-,37+,38+/m0/s1
InChI Key QOGLCVGBCVWQBC-YHCZPNBCSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C38H40O14
Molecular Weight 720.70 g/mol
Exact Mass 720.24180595 g/mol
Topological Polar Surface Area (TPSA) 179.00 Ų
XlogP 3.10
Atomic LogP (AlogP) 1.93
H-Bond Acceptor 14
H-Bond Donor 1
Rotatable Bonds 7

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of Vernodalidimer A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9372 93.72%
Caco-2 - 0.8618 86.18%
Blood Brain Barrier + 0.6000 60.00%
Human oral bioavailability + 0.6143 61.43%
Subcellular localzation Mitochondria 0.8237 82.37%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8752 87.52%
OATP1B3 inhibitior + 0.9313 93.13%
MATE1 inhibitior - 0.7600 76.00%
OCT2 inhibitior - 0.7271 72.71%
BSEP inhibitior + 0.8429 84.29%
P-glycoprotein inhibitior + 0.7512 75.12%
P-glycoprotein substrate + 0.6265 62.65%
CYP3A4 substrate + 0.7105 71.05%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8339 83.39%
CYP3A4 inhibition - 0.7567 75.67%
CYP2C9 inhibition - 0.8948 89.48%
CYP2C19 inhibition - 0.8322 83.22%
CYP2D6 inhibition - 0.9112 91.12%
CYP1A2 inhibition - 0.8379 83.79%
CYP2C8 inhibition + 0.7153 71.53%
CYP inhibitory promiscuity - 0.8429 84.29%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.5608 56.08%
Eye corrosion - 0.9716 97.16%
Eye irritation - 0.9026 90.26%
Skin irritation - 0.7415 74.15%
Skin corrosion - 0.9310 93.10%
Ames mutagenesis - 0.5470 54.70%
Human Ether-a-go-go-Related Gene inhibition + 0.6703 67.03%
Micronuclear - 0.7500 75.00%
Hepatotoxicity + 0.5500 55.00%
skin sensitisation - 0.8093 80.93%
Respiratory toxicity + 0.6556 65.56%
Reproductive toxicity + 0.7333 73.33%
Mitochondrial toxicity + 0.6125 61.25%
Nephrotoxicity + 0.5829 58.29%
Acute Oral Toxicity (c) III 0.4388 43.88%
Estrogen receptor binding + 0.7657 76.57%
Androgen receptor binding + 0.7583 75.83%
Thyroid receptor binding + 0.5278 52.78%
Glucocorticoid receptor binding + 0.5989 59.89%
Aromatase binding + 0.6064 60.64%
PPAR gamma + 0.7212 72.12%
Honey bee toxicity - 0.6154 61.54%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity - 0.5300 53.00%
Fish aquatic toxicity + 0.9369 93.69%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.34% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 90.18% 96.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 89.19% 97.25%
CHEMBL241 Q14432 Phosphodiesterase 3A 88.67% 92.94%
CHEMBL3137262 O60341 LSD1/CoREST complex 87.86% 97.09%
CHEMBL340 P08684 Cytochrome P450 3A4 87.80% 91.19%
CHEMBL1994 P08235 Mineralocorticoid receptor 87.70% 100.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 87.69% 94.45%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 87.50% 91.07%
CHEMBL1806 P11388 DNA topoisomerase II alpha 87.23% 89.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.38% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 85.36% 86.33%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 84.60% 92.62%
CHEMBL216 P11229 Muscarinic acetylcholine receptor M1 84.18% 94.23%
CHEMBL211 P08172 Muscarinic acetylcholine receptor M2 83.60% 94.97%
CHEMBL4530 P00488 Coagulation factor XIII 82.66% 96.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.35% 95.89%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 80.62% 93.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 80.56% 99.23%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 80.17% 89.34%
CHEMBL2581 P07339 Cathepsin D 80.06% 98.95%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Baccharoides anthelmintica

Cross-Links

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PubChem 50942790
LOTUS LTS0039079
wikiData Q105224884