Vanicoside A

Details

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Internal ID b6579dae-d658-41eb-b35b-082458aeacce
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Pentacarboxylic acids and derivatives
IUPAC Name [(2R,3R,4S,5R)-5-[(2R,3R,4S,5S,6R)-3-acetyloxy-4,5-dihydroxy-6-[[(E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxymethyl]oxan-2-yl]oxy-3-hydroxy-4-[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxy-5-[[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxymethyl]oxolan-2-yl]methyl (E)-3-(4-hydroxyphenyl)prop-2-enoate
SMILES (Canonical) CC(=O)OC1C(C(C(OC1OC2(C(C(C(O2)COC(=O)C=CC3=CC=C(C=C3)O)O)OC(=O)C=CC4=CC=C(C=C4)O)COC(=O)C=CC5=CC=C(C=C5)O)COC(=O)C=CC6=CC(=C(C=C6)O)OC)O)O
SMILES (Isomeric) CC(=O)O[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[C@@]2([C@H]([C@@H]([C@H](O2)COC(=O)/C=C/C3=CC=C(C=C3)O)O)OC(=O)/C=C/C4=CC=C(C=C4)O)COC(=O)/C=C/C5=CC=C(C=C5)O)COC(=O)/C=C/C6=CC(=C(C=C6)O)OC)O)O
InChI InChI=1S/C51H50O21/c1-29(52)68-48-47(63)45(61)39(26-65-42(58)23-13-33-9-20-37(56)38(25-33)64-2)69-50(48)72-51(28-67-43(59)22-11-31-5-16-35(54)17-6-31)49(70-44(60)24-12-32-7-18-36(55)19-8-32)46(62)40(71-51)27-66-41(57)21-10-30-3-14-34(53)15-4-30/h3-25,39-40,45-50,53-56,61-63H,26-28H2,1-2H3/b21-10+,22-11+,23-13+,24-12+/t39-,40-,45-,46-,47+,48-,49+,50-,51-/m1/s1
InChI Key RNXDQKHOEWIRNH-FBMBONOOSA-N
Popularity 7 references in papers

Physical and Chemical Properties

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Molecular Formula C51H50O21
Molecular Weight 998.90 g/mol
Exact Mass 998.28445860 g/mol
Topological Polar Surface Area (TPSA) 310.00 Ų
XlogP 4.20
Atomic LogP (AlogP) 3.06
H-Bond Acceptor 21
H-Bond Donor 7
Rotatable Bonds 19

Synonyms

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155179-22-9
[(2R,3R,4S,5R)-5-[(2R,3R,4S,5S,6R)-3-acetyloxy-4,5-dihydroxy-6-[[(E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxymethyl]oxan-2-yl]oxy-3-hydroxy-4-[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxy-5-[[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxymethyl]oxolan-2-yl]methyl (E)-3-(4-hydroxyphenyl)prop-2-enoate
alpha-D-Glucopyranoside, 1,3,6-tris-O-((2E)-3-(4-hydroxyphenyl)-1-oxo-2-propenyl)-beta-D-fructofuranosyl, 2-acetate 6-((2E)-3-(4-hydroxy-3-methoxyphenyl)-2-propenoate)
alpha-D-Glucopyranoside, 1,3,6-tris-O-(3-(4-hydroxyphenyl)-1-oxo-2-propenyl)-beta-D-fructofuranosyl, 2-acetate 6-(3-(4-hydroxy-3-methoxyphenyl)-2-propenoate), (1(1(E),3(E),6(E)),6(E))-

2D Structure

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2D Structure of Vanicoside A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5638 56.38%
Caco-2 - 0.8718 87.18%
Blood Brain Barrier - 0.5250 52.50%
Human oral bioavailability - 0.8286 82.86%
Subcellular localzation Mitochondria 0.8495 84.95%
OATP2B1 inhibitior + 0.5580 55.80%
OATP1B1 inhibitior + 0.8292 82.92%
OATP1B3 inhibitior + 0.9332 93.32%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior + 0.9711 97.11%
P-glycoprotein inhibitior + 0.7534 75.34%
P-glycoprotein substrate - 0.5710 57.10%
CYP3A4 substrate + 0.6805 68.05%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8707 87.07%
CYP3A4 inhibition - 0.7933 79.33%
CYP2C9 inhibition - 0.6955 69.55%
CYP2C19 inhibition - 0.5935 59.35%
CYP2D6 inhibition - 0.9110 91.10%
CYP1A2 inhibition - 0.8161 81.61%
CYP2C8 inhibition + 0.8317 83.17%
CYP inhibitory promiscuity - 0.7254 72.54%
UGT catelyzed + 1.0000 100.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.6121 61.21%
Eye corrosion - 0.9900 99.00%
Eye irritation - 0.9056 90.56%
Skin irritation - 0.8603 86.03%
Skin corrosion - 0.9507 95.07%
Ames mutagenesis - 0.6800 68.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7831 78.31%
Micronuclear + 0.5248 52.48%
Hepatotoxicity - 0.8750 87.50%
skin sensitisation - 0.7765 77.65%
Respiratory toxicity - 0.5889 58.89%
Reproductive toxicity + 0.7556 75.56%
Mitochondrial toxicity + 0.5500 55.00%
Nephrotoxicity - 0.8846 88.46%
Acute Oral Toxicity (c) III 0.6429 64.29%
Estrogen receptor binding + 0.8345 83.45%
Androgen receptor binding + 0.7207 72.07%
Thyroid receptor binding + 0.6020 60.20%
Glucocorticoid receptor binding + 0.6542 65.42%
Aromatase binding + 0.5709 57.09%
PPAR gamma + 0.7593 75.93%
Honey bee toxicity - 0.6922 69.22%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity - 0.5255 52.55%
Fish aquatic toxicity + 0.9717 97.17%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.60% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.63% 96.09%
CHEMBL1293249 Q13887 Kruppel-like factor 5 97.23% 86.33%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 95.34% 96.00%
CHEMBL3194 P02766 Transthyretin 94.55% 90.71%
CHEMBL1806 P11388 DNA topoisomerase II alpha 92.85% 89.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.03% 95.56%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 91.78% 94.45%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 91.57% 85.14%
CHEMBL3401 O75469 Pregnane X receptor 90.97% 94.73%
CHEMBL4208 P20618 Proteasome component C5 89.29% 90.00%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 88.52% 95.50%
CHEMBL3060 Q9Y345 Glycine transporter 2 88.12% 99.17%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 87.50% 89.62%
CHEMBL4630 O14757 Serine/threonine-protein kinase Chk1 87.21% 97.03%
CHEMBL340 P08684 Cytochrome P450 3A4 85.70% 91.19%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 84.74% 95.89%
CHEMBL5852 Q96P65 Pyroglutamylated RFamide peptide receptor 83.72% 85.00%
CHEMBL3714130 P46095 G-protein coupled receptor 6 83.69% 97.36%
CHEMBL5255 O00206 Toll-like receptor 4 83.03% 92.50%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 82.73% 97.21%
CHEMBL2146302 O94925 Glutaminase kidney isoform, mitochondrial 81.27% 100.00%
CHEMBL1293316 Q9HBX9 Relaxin receptor 1 81.23% 82.50%
CHEMBL2581 P07339 Cathepsin D 80.89% 98.95%
CHEMBL1951 P21397 Monoamine oxidase A 80.55% 91.49%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.40% 95.89%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 80.23% 99.15%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Persicaria pensylvanica
Polygonum perfoliatum
Reynoutria sachalinensis

Cross-Links

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PubChem 6449878
NPASS NPC18517
LOTUS LTS0154033
wikiData Q105241888