Secologanin dimethyl acetal

Details

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Internal ID 63a9a474-01bd-488e-9895-a413a6d910bb
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides
IUPAC Name methyl (2S,3R,4S)-4-(2,2-dimethoxyethyl)-3-ethenyl-2-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-3,4-dihydro-2H-pyran-5-carboxylate
SMILES (Canonical) COC(CC1C(C(OC=C1C(=O)OC)OC2C(C(C(C(O2)CO)O)O)O)C=C)OC
SMILES (Isomeric) COC(C[C@H]1[C@H]([C@@H](OC=C1C(=O)OC)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)C=C)OC
InChI InChI=1S/C19H30O11/c1-5-9-10(6-13(25-2)26-3)11(17(24)27-4)8-28-18(9)30-19-16(23)15(22)14(21)12(7-20)29-19/h5,8-10,12-16,18-23H,1,6-7H2,2-4H3/t9-,10+,12-,14-,15+,16-,18+,19+/m1/s1
InChI Key HUVIXLWRQSMCLN-PXRCHJMLSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C19H30O11
Molecular Weight 434.40 g/mol
Exact Mass 434.17881177 g/mol
Topological Polar Surface Area (TPSA) 153.00 Ų
XlogP -0.80
Atomic LogP (AlogP) -1.36
H-Bond Acceptor 11
H-Bond Donor 4
Rotatable Bonds 9

Synonyms

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77988-07-9
methyl (2S,3R,4S)-4-(2,2-dimethoxyethyl)-3-ethenyl-2-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-3,4-dihydro-2H-pyran-5-carboxylate
2H-Pyran-5-carboxylic acid, 4-(2,2-dimethoxyethyl)-3-ethenyl-2-(beta-D-glucopyranosyloxy)-3,4-dihydro-, methyl ester, (2S,3R,4S)-
CHEMBL464473
DTXSID60228642
C19H30O11
AKOS040762323
C19-H30-O11

2D Structure

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2D Structure of Secologanin dimethyl acetal

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.6421 64.21%
Caco-2 - 0.8128 81.28%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.7212 72.12%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.7875 78.75%
OATP1B3 inhibitior + 0.9347 93.47%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.9036 90.36%
P-glycoprotein inhibitior - 0.7436 74.36%
P-glycoprotein substrate - 0.7555 75.55%
CYP3A4 substrate + 0.6091 60.91%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8634 86.34%
CYP3A4 inhibition - 0.8932 89.32%
CYP2C9 inhibition - 0.9147 91.47%
CYP2C19 inhibition - 0.8634 86.34%
CYP2D6 inhibition - 0.9118 91.18%
CYP1A2 inhibition - 0.9176 91.76%
CYP2C8 inhibition - 0.6218 62.18%
CYP inhibitory promiscuity - 0.8438 84.38%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.7809 78.09%
Eye corrosion - 0.9859 98.59%
Eye irritation - 0.9391 93.91%
Skin irritation - 0.7836 78.36%
Skin corrosion - 0.9597 95.97%
Ames mutagenesis + 0.5022 50.22%
Human Ether-a-go-go-Related Gene inhibition - 0.6095 60.95%
Micronuclear - 0.7041 70.41%
Hepatotoxicity - 0.6625 66.25%
skin sensitisation - 0.8673 86.73%
Respiratory toxicity - 0.5889 58.89%
Reproductive toxicity + 0.6111 61.11%
Mitochondrial toxicity - 0.6625 66.25%
Nephrotoxicity + 0.5869 58.69%
Acute Oral Toxicity (c) III 0.5762 57.62%
Estrogen receptor binding + 0.6014 60.14%
Androgen receptor binding - 0.5171 51.71%
Thyroid receptor binding + 0.5738 57.38%
Glucocorticoid receptor binding - 0.5491 54.91%
Aromatase binding + 0.5509 55.09%
PPAR gamma + 0.6060 60.60%
Honey bee toxicity - 0.7214 72.14%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.8100 81.00%
Fish aquatic toxicity + 0.7288 72.88%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.28% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.66% 96.09%
CHEMBL3401 O75469 Pregnane X receptor 91.76% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 89.31% 99.17%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 88.11% 96.00%
CHEMBL2581 P07339 Cathepsin D 87.84% 98.95%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 82.48% 91.24%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 81.48% 86.92%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.73% 86.33%

Cross-Links

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PubChem 157140
NPASS NPC44840
LOTUS LTS0266081
wikiData Q72507270