Saponin D

Details

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Internal ID 409cf22d-a2b7-4c2f-98e1-a17b717f6612
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name 2-[4,5-dihydroxy-6-(hydroxymethyl)-2-[[2,6,6,10,16-pentamethyl-18-(2-methylprop-1-enyl)-16-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy-19,21-dioxahexacyclo[18.2.1.01,14.02,11.05,10.015,20]tricosan-7-yl]oxy]oxan-3-yl]oxy-6-methyloxane-3,4,5-triol
SMILES (Canonical) CC1C(C(C(C(O1)OC2C(C(C(OC2OC3CCC4(C5CCC6C7C(CC(OC78CC6(C5(CCC4C3(C)C)C)CO8)C=C(C)C)(C)OC9C(C(C(C(O9)C)O)O)O)C)CO)O)O)O)O)O
SMILES (Isomeric) CC1C(C(C(C(O1)OC2C(C(C(OC2OC3CCC4(C5CCC6C7C(CC(OC78CC6(C5(CCC4C3(C)C)C)CO8)C=C(C)C)(C)OC9C(C(C(C(O9)C)O)O)O)C)CO)O)O)O)O)O
InChI InChI=1S/C48H78O17/c1-21(2)16-24-17-46(9,65-41-37(57)34(54)31(51)23(4)60-41)39-25-10-11-28-44(7)14-13-29(43(5,6)27(44)12-15-45(28,8)47(25)19-48(39,64-24)58-20-47)62-42-38(35(55)32(52)26(18-49)61-42)63-40-36(56)33(53)30(50)22(3)59-40/h16,22-42,49-57H,10-15,17-20H2,1-9H3
InChI Key FJESIUXDUUJRCG-UHFFFAOYSA-N
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C48H78O17
Molecular Weight 927.10 g/mol
Exact Mass 926.52390102 g/mol
Topological Polar Surface Area (TPSA) 256.00 Ų
XlogP 2.50
Atomic LogP (AlogP) 1.38
H-Bond Acceptor 17
H-Bond Donor 9
Rotatable Bonds 8

Synonyms

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CHEBI:172857
DTXSID201101029
2-[4,5-dihydroxy-6-(hydroxymethyl)-2-[[2,6,6,10,16-pentamethyl-18-(2-methylprop-1-enyl)-16-(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy-19,21-dioxahexacyclo[18.2.1.01,14.02,11.05,10.015,20]tricosan-7-yl]oxy]oxan-3-yl]oxy-6-methyloxane-3,4,5-triol
79190-14-0
beta-D-Glucopyranoside, (3beta,16beta,23R)-20-[(6-deoxy-alpha-L-mannopyranosyl)oxy]-16,23:16,30-diepoxydammar-24-en-3-yl 2-O-(6-deoxy-alpha-L-mannopyranosyl)-

2D Structure

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2D Structure of Saponin D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6915 69.15%
Caco-2 - 0.8858 88.58%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Mitochondria 0.7917 79.17%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8357 83.57%
OATP1B3 inhibitior + 0.8498 84.98%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.5500 55.00%
BSEP inhibitior + 0.6365 63.65%
P-glycoprotein inhibitior + 0.7593 75.93%
P-glycoprotein substrate - 0.5284 52.84%
CYP3A4 substrate + 0.7447 74.47%
CYP2C9 substrate - 0.8054 80.54%
CYP2D6 substrate - 0.8216 82.16%
CYP3A4 inhibition - 0.9458 94.58%
CYP2C9 inhibition - 0.8562 85.62%
CYP2C19 inhibition - 0.8858 88.58%
CYP2D6 inhibition - 0.9272 92.72%
CYP1A2 inhibition - 0.8798 87.98%
CYP2C8 inhibition + 0.7334 73.34%
CYP inhibitory promiscuity - 0.8626 86.26%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.5851 58.51%
Eye corrosion - 0.9896 98.96%
Eye irritation - 0.9049 90.49%
Skin irritation - 0.6285 62.85%
Skin corrosion - 0.9460 94.60%
Ames mutagenesis - 0.6800 68.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8281 82.81%
Micronuclear - 0.8900 89.00%
Hepatotoxicity - 0.8375 83.75%
skin sensitisation - 0.9034 90.34%
Respiratory toxicity + 0.6111 61.11%
Reproductive toxicity + 0.7889 78.89%
Mitochondrial toxicity - 0.5875 58.75%
Nephrotoxicity - 0.9110 91.10%
Acute Oral Toxicity (c) I 0.4680 46.80%
Estrogen receptor binding + 0.7170 71.70%
Androgen receptor binding + 0.7643 76.43%
Thyroid receptor binding - 0.5258 52.58%
Glucocorticoid receptor binding + 0.7044 70.44%
Aromatase binding + 0.6667 66.67%
PPAR gamma + 0.7608 76.08%
Honey bee toxicity - 0.5448 54.48%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity - 0.5400 54.00%
Fish aquatic toxicity + 0.9531 95.31%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.95% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.95% 91.11%
CHEMBL218 P21554 Cannabinoid CB1 receptor 93.68% 96.61%
CHEMBL325 Q13547 Histone deacetylase 1 92.62% 95.92%
CHEMBL2243 O00519 Anandamide amidohydrolase 91.47% 97.53%
CHEMBL3714130 P46095 G-protein coupled receptor 6 90.35% 97.36%
CHEMBL3137262 O60341 LSD1/CoREST complex 89.85% 97.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.12% 89.00%
CHEMBL4681 P42330 Aldo-keto-reductase family 1 member C3 88.45% 89.05%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 88.25% 95.50%
CHEMBL1994 P08235 Mineralocorticoid receptor 87.74% 100.00%
CHEMBL203 P00533 Epidermal growth factor receptor erbB1 87.73% 97.34%
CHEMBL237 P41145 Kappa opioid receptor 87.73% 98.10%
CHEMBL241 Q14432 Phosphodiesterase 3A 87.71% 92.94%
CHEMBL4618 P09960 Leukotriene A4 hydrolase 87.37% 97.86%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 87.13% 91.24%
CHEMBL4005 P42336 PI3-kinase p110-alpha subunit 86.84% 97.47%
CHEMBL1937 Q92769 Histone deacetylase 2 86.49% 94.75%
CHEMBL221 P23219 Cyclooxygenase-1 86.38% 90.17%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 86.26% 98.75%
CHEMBL5608 Q16288 NT-3 growth factor receptor 85.01% 95.89%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 84.69% 95.89%
CHEMBL1907601 P11802 Cyclin-dependent kinase 4/cyclin D1 84.55% 98.99%
CHEMBL226 P30542 Adenosine A1 receptor 84.46% 95.93%
CHEMBL2534 O15530 3-phosphoinositide dependent protein kinase-1 83.50% 95.36%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.22% 86.33%
CHEMBL3060 Q9Y345 Glycine transporter 2 83.13% 99.17%
CHEMBL3589 P55263 Adenosine kinase 82.79% 98.05%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 82.40% 100.00%
CHEMBL2095194 P08709 Coagulation factor VII/tissue factor 81.79% 99.17%
CHEMBL5888 Q99558 Mitogen-activated protein kinase kinase kinase 14 81.62% 100.00%
CHEMBL3922 P50579 Methionine aminopeptidase 2 80.84% 97.28%
CHEMBL5255 O00206 Toll-like receptor 4 80.57% 92.50%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 80.50% 94.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Hovenia dulcis
Tetrapleura tetraptera

Cross-Links

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PubChem 131752825
LOTUS LTS0041219
wikiData Q104996015