Riccardin C

Details

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Internal ID 7c8e1948-674b-4cef-bd91-7942a956fb8d
Taxonomy Lignans, neolignans and related compounds
IUPAC Name 14-oxapentacyclo[20.2.2.210,13.115,19.02,7]nonacosa-1(24),2(7),3,5,10(29),11,13(28),15,17,19(27),22,25-dodecaene-5,16,24-triol
SMILES (Canonical) C1CC2=C(C=CC(=C2)O)C3=C(C=C(CCC4=CC(=C(C=C4)O)OC5=CC=C1C=C5)C=C3)O
SMILES (Isomeric) C1CC2=C(C=CC(=C2)O)C3=C(C=C(CCC4=CC(=C(C=C4)O)OC5=CC=C1C=C5)C=C3)O
InChI InChI=1S/C28H24O4/c29-22-9-13-24-21(17-22)8-3-18-4-10-23(11-5-18)32-28-16-20(7-14-26(28)30)2-1-19-6-12-25(24)27(31)15-19/h4-7,9-17,29-31H,1-3,8H2
InChI Key JMKSVONWZFVEAI-UHFFFAOYSA-N
Popularity 40 references in papers

Physical and Chemical Properties

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Molecular Formula C28H24O4
Molecular Weight 424.50 g/mol
Exact Mass 424.16745924 g/mol
Topological Polar Surface Area (TPSA) 69.90 Ų
XlogP 6.50
Atomic LogP (AlogP) 6.15
H-Bond Acceptor 4
H-Bond Donor 3
Rotatable Bonds 0

Synonyms

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84575-08-6
Riccardi C
R9TH5VM6BD
D00HVP
CHEMBL411317
SCHEMBL22704770
BDBM23839
DTXSID101030291
Q7322888
1,2,13,14-Tetrahydro-3,6:15,18-dietheno-8,12-metheno-12H-7-benzoxacycloeicosin-9,17,21-triol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Riccardin C

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9188 91.88%
Caco-2 - 0.8063 80.63%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.6571 65.71%
Subcellular localzation Mitochondria 0.7780 77.80%
OATP2B1 inhibitior - 0.5685 56.85%
OATP1B1 inhibitior + 0.8989 89.89%
OATP1B3 inhibitior + 0.9434 94.34%
MATE1 inhibitior - 0.7600 76.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior + 0.9088 90.88%
P-glycoprotein inhibitior + 0.8353 83.53%
P-glycoprotein substrate - 0.8231 82.31%
CYP3A4 substrate + 0.5248 52.48%
CYP2C9 substrate - 0.6107 61.07%
CYP2D6 substrate + 0.4139 41.39%
CYP3A4 inhibition - 0.8648 86.48%
CYP2C9 inhibition + 0.7563 75.63%
CYP2C19 inhibition + 0.6017 60.17%
CYP2D6 inhibition - 0.8770 87.70%
CYP1A2 inhibition + 0.8093 80.93%
CYP2C8 inhibition + 0.4794 47.94%
CYP inhibitory promiscuity - 0.5059 50.59%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.8000 80.00%
Carcinogenicity (trinary) Non-required 0.4564 45.64%
Eye corrosion - 0.9586 95.86%
Eye irritation - 0.5000 50.00%
Skin irritation + 0.5454 54.54%
Skin corrosion - 0.9346 93.46%
Ames mutagenesis - 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7192 71.92%
Micronuclear - 0.5100 51.00%
Hepatotoxicity + 0.5625 56.25%
skin sensitisation - 0.6265 62.65%
Respiratory toxicity + 0.6778 67.78%
Reproductive toxicity + 0.5778 57.78%
Mitochondrial toxicity - 0.6125 61.25%
Nephrotoxicity + 0.5657 56.57%
Acute Oral Toxicity (c) III 0.7685 76.85%
Estrogen receptor binding + 0.9262 92.62%
Androgen receptor binding + 0.8832 88.32%
Thyroid receptor binding + 0.6422 64.22%
Glucocorticoid receptor binding + 0.7585 75.85%
Aromatase binding + 0.7134 71.34%
PPAR gamma + 0.9026 90.26%
Honey bee toxicity - 0.9190 91.90%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity + 0.6300 63.00%
Fish aquatic toxicity + 0.8041 80.41%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL2808 Q13133 LXR-alpha 4900 nM
IC50
PMID: 18343126
CHEMBL4093 P55055 LXR-beta 6600 nM
IC50
PMID: 18343126

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.23% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 98.33% 91.49%
CHEMBL242 Q92731 Estrogen receptor beta 96.95% 98.35%
CHEMBL5145 P15056 Serine/threonine-protein kinase B-raf 91.64% 97.90%
CHEMBL2581 P07339 Cathepsin D 88.61% 98.95%
CHEMBL4208 P20618 Proteasome component C5 88.21% 90.00%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 88.13% 93.40%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 87.43% 99.15%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.51% 95.56%
CHEMBL5311 P37023 Serine/threonine-protein kinase receptor R3 85.86% 82.67%
CHEMBL2041 P07949 Tyrosine-protein kinase receptor RET 84.92% 91.79%
CHEMBL3194 P02766 Transthyretin 83.96% 90.71%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 83.85% 90.71%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.99% 86.33%
CHEMBL5852 Q96P65 Pyroglutamylated RFamide peptide receptor 82.34% 85.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 81.50% 96.09%
CHEMBL3060 Q9Y345 Glycine transporter 2 81.24% 99.17%
CHEMBL2107 P61073 C-X-C chemokine receptor type 4 81.16% 93.10%
CHEMBL267 P12931 Tyrosine-protein kinase SRC 80.81% 95.69%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Blasia pusilla
Dumortiera hirsuta
Jungermannia infusca
Marchantia polymorpha
Mastigophora diclados
Monoclea forsteri
Plagiochasma intermedium
Plagiochasma rupestre
Primula veris subsp. macrocalyx
Reboulia hemisphaerica
Ricciocarpos natans

Cross-Links

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PubChem 10070992
NPASS NPC73656
ChEMBL CHEMBL411317
LOTUS LTS0142955
wikiData Q7322888