(R)-Skyrin 2-xyloside

Details

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Internal ID 957a09c3-fdf9-4508-b1d9-44c54ea900e1
Taxonomy Benzenoids > Anthracenes > Anthraquinones > Hydroxyanthraquinones
IUPAC Name 4,5-dihydroxy-7-methyl-1-(2,4,5-trihydroxy-7-methyl-9,10-dioxoanthracen-1-yl)-2-(3,4,5-trihydroxyoxan-2-yl)oxyanthracene-9,10-dione
SMILES (Canonical) CC1=CC2=C(C(=C1)O)C(=O)C3=C(C2=O)C(=C(C=C3O)OC4C(C(C(CO4)O)O)O)C5=C6C(=C(C=C5O)O)C(=O)C7=C(C6=O)C=C(C=C7O)C
SMILES (Isomeric) CC1=CC2=C(C(=C1)O)C(=O)C3=C(C2=O)C(=C(C=C3O)OC4C(C(C(CO4)O)O)O)C5=C6C(=C(C=C5O)O)C(=O)C7=C(C6=O)C=C(C=C7O)C
InChI InChI=1S/C35H26O14/c1-10-3-12-21(14(36)5-10)32(45)24-17(39)7-16(38)23(27(24)29(12)42)26-20(49-35-34(47)31(44)19(41)9-48-35)8-18(40)25-28(26)30(43)13-4-11(2)6-15(37)22(13)33(25)46/h3-8,19,31,34-41,44,47H,9H2,1-2H3
InChI Key RTWSMOOOURBUSZ-UHFFFAOYSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C35H26O14
Molecular Weight 670.60 g/mol
Exact Mass 670.13225550 g/mol
Topological Polar Surface Area (TPSA) 249.00 Ų
XlogP 3.40
Atomic LogP (AlogP) 1.87
H-Bond Acceptor 14
H-Bond Donor 8
Rotatable Bonds 3

Synonyms

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CHEBI:184879
2,4,4',5,5'-Pentahydroxy-7,7'-dimethyl-2'-[(3,4,5-trihydroxyoxan-2-yl)oxy]-9H,9'H,10H,10'H-[1,1'-bianthracene]-9,9',10,10'-tetrone
4,5-dihydroxy-7-methyl-1-(2,4,5-trihydroxy-7-methyl-9,10-dioxoanthracen-1-yl)-2-(3,4,5-trihydroxyoxan-2-yl)oxyanthracene-9,10-dione

2D Structure

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2D Structure of (R)-Skyrin 2-xyloside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6581 65.81%
Caco-2 - 0.8940 89.40%
Blood Brain Barrier - 0.7750 77.50%
Human oral bioavailability - 0.5286 52.86%
Subcellular localzation Mitochondria 0.6237 62.37%
OATP2B1 inhibitior + 0.5674 56.74%
OATP1B1 inhibitior + 0.9384 93.84%
OATP1B3 inhibitior + 0.9364 93.64%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.8754 87.54%
P-glycoprotein inhibitior + 0.6835 68.35%
P-glycoprotein substrate - 0.7961 79.61%
CYP3A4 substrate + 0.6006 60.06%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8559 85.59%
CYP3A4 inhibition - 0.8942 89.42%
CYP2C9 inhibition - 0.8981 89.81%
CYP2C19 inhibition - 0.9395 93.95%
CYP2D6 inhibition - 0.9349 93.49%
CYP1A2 inhibition - 0.7884 78.84%
CYP2C8 inhibition - 0.7819 78.19%
CYP inhibitory promiscuity - 0.9275 92.75%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6993 69.93%
Eye corrosion - 0.9926 99.26%
Eye irritation - 0.9006 90.06%
Skin irritation - 0.8211 82.11%
Skin corrosion - 0.9445 94.45%
Ames mutagenesis + 0.6100 61.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7831 78.31%
Micronuclear + 0.7733 77.33%
Hepatotoxicity + 0.5552 55.52%
skin sensitisation - 0.9291 92.91%
Respiratory toxicity + 0.6444 64.44%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.7250 72.50%
Nephrotoxicity - 0.6548 65.48%
Acute Oral Toxicity (c) III 0.5713 57.13%
Estrogen receptor binding + 0.8308 83.08%
Androgen receptor binding + 0.5605 56.05%
Thyroid receptor binding - 0.5057 50.57%
Glucocorticoid receptor binding + 0.6528 65.28%
Aromatase binding - 0.5882 58.82%
PPAR gamma + 0.6455 64.55%
Honey bee toxicity - 0.7653 76.53%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.6900 69.00%
Fish aquatic toxicity + 0.9311 93.11%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.66% 91.11%
CHEMBL1806 P11388 DNA topoisomerase II alpha 96.58% 89.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 96.05% 95.56%
CHEMBL2581 P07339 Cathepsin D 94.54% 98.95%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 92.82% 99.23%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.71% 94.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.14% 96.09%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 88.53% 90.71%
CHEMBL1951 P21397 Monoamine oxidase A 87.53% 91.49%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 86.16% 96.21%
CHEMBL241 Q14432 Phosphodiesterase 3A 85.78% 92.94%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 84.90% 96.77%
CHEMBL3401 O75469 Pregnane X receptor 84.73% 94.73%
CHEMBL1994 P08235 Mineralocorticoid receptor 83.40% 100.00%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 83.39% 96.90%
CHEMBL340 P08684 Cytochrome P450 3A4 83.00% 91.19%
CHEMBL4208 P20618 Proteasome component C5 82.72% 90.00%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 82.02% 97.14%
CHEMBL5608 Q16288 NT-3 growth factor receptor 81.50% 95.89%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.14% 86.33%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Hypericum perforatum
Hypericum sampsonii
Phlomoides tuberosa

Cross-Links

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PubChem 73804165
LOTUS LTS0177128
wikiData Q105131226