(R)-Sargachromenol

Details

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Internal ID 963a070c-6b57-4f63-92f4-8d9d6569f936
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Quinone and hydroquinone lipids > Vitamin E compounds > Tocotrienols
IUPAC Name (2Z,6E)-9-[(2R)-6-hydroxy-2,8-dimethylchromen-2-yl]-6-methyl-2-(4-methylpent-3-enyl)nona-2,6-dienoic acid
SMILES (Canonical) CC1=CC(=CC2=C1OC(C=C2)(C)CCC=C(C)CCC=C(CCC=C(C)C)C(=O)O)O
SMILES (Isomeric) CC1=CC(=CC2=C1O[C@](C=C2)(C)CC/C=C(\C)/CC/C=C(/CCC=C(C)C)\C(=O)O)O
InChI InChI=1S/C27H36O4/c1-19(2)9-6-12-22(26(29)30)13-7-10-20(3)11-8-15-27(5)16-14-23-18-24(28)17-21(4)25(23)31-27/h9,11,13-14,16-18,28H,6-8,10,12,15H2,1-5H3,(H,29,30)/b20-11+,22-13-/t27-/m1/s1
InChI Key QKXAGRZCXAYBQX-HKRZBUDOSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C27H36O4
Molecular Weight 424.60 g/mol
Exact Mass 424.26135963 g/mol
Topological Polar Surface Area (TPSA) 66.80 Ų
XlogP 7.20
Atomic LogP (AlogP) 7.13
H-Bond Acceptor 3
H-Bond Donor 2
Rotatable Bonds 10

Synonyms

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CHEMBL1668777
BDBM50335911

2D Structure

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2D Structure of (R)-Sargachromenol

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9872 98.72%
Caco-2 + 0.5342 53.42%
Blood Brain Barrier - 0.5000 50.00%
Human oral bioavailability - 0.6857 68.57%
Subcellular localzation Mitochondria 0.8251 82.51%
OATP2B1 inhibitior - 0.8589 85.89%
OATP1B1 inhibitior + 0.7789 77.89%
OATP1B3 inhibitior + 0.7971 79.71%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.7500 75.00%
BSEP inhibitior + 0.9886 98.86%
P-glycoprotein inhibitior + 0.8384 83.84%
P-glycoprotein substrate - 0.6251 62.51%
CYP3A4 substrate + 0.6435 64.35%
CYP2C9 substrate - 0.6037 60.37%
CYP2D6 substrate - 0.8634 86.34%
CYP3A4 inhibition - 0.6705 67.05%
CYP2C9 inhibition - 0.7770 77.70%
CYP2C19 inhibition - 0.5301 53.01%
CYP2D6 inhibition - 0.8400 84.00%
CYP1A2 inhibition + 0.6074 60.74%
CYP2C8 inhibition + 0.6538 65.38%
CYP inhibitory promiscuity - 0.6589 65.89%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9200 92.00%
Carcinogenicity (trinary) Non-required 0.7281 72.81%
Eye corrosion - 0.9937 99.37%
Eye irritation - 0.8964 89.64%
Skin irritation - 0.6949 69.49%
Skin corrosion - 0.9567 95.67%
Ames mutagenesis - 0.6200 62.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8409 84.09%
Micronuclear - 0.8900 89.00%
Hepatotoxicity - 0.5442 54.42%
skin sensitisation - 0.7017 70.17%
Respiratory toxicity - 0.5000 50.00%
Reproductive toxicity + 0.8222 82.22%
Mitochondrial toxicity + 0.7250 72.50%
Nephrotoxicity - 0.5705 57.05%
Acute Oral Toxicity (c) III 0.6211 62.11%
Estrogen receptor binding + 0.8342 83.42%
Androgen receptor binding + 0.5225 52.25%
Thyroid receptor binding + 0.7078 70.78%
Glucocorticoid receptor binding + 0.7261 72.61%
Aromatase binding + 0.6981 69.81%
PPAR gamma + 0.8308 83.08%
Honey bee toxicity - 0.8400 84.00%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity - 0.5000 50.00%
Fish aquatic toxicity + 0.9968 99.68%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL2047 Q96RI1 Bile acid receptor FXR 9000 nM
IC50
PMID: 21142112

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.46% 91.11%
CHEMBL3401 O75469 Pregnane X receptor 95.28% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 93.66% 99.17%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 91.97% 83.57%
CHEMBL4769 O95749 Geranylgeranyl pyrophosphate synthetase 91.62% 92.08%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.30% 86.33%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.25% 89.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 87.29% 95.56%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 87.20% 94.45%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 87.14% 96.09%
CHEMBL4208 P20618 Proteasome component C5 86.77% 90.00%
CHEMBL2581 P07339 Cathepsin D 84.13% 98.95%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 83.61% 96.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Iryanthera juruensis
Lycopus lucidus
Pycnanthus angolensis
Roldana barba-johannis

Cross-Links

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PubChem 51003424
NPASS NPC95034
ChEMBL CHEMBL1668777
LOTUS LTS0059560
wikiData Q105223377