Pyramidatin B

Details

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Internal ID 2674e5b0-a921-4a63-99d2-8f1d9b818bf6
Taxonomy Phenylpropanoids and polyketides > Tannins > Hydrolyzable tannins
IUPAC Name (1R,15R,18R)-4,5,6,10,11-pentamethoxy-18-methyl-17-oxatetracyclo[13.2.1.02,7.08,13]octadeca-2,4,6,8,10,12-hexaen-9-ol
SMILES (Canonical) CC1C2CC3=CC(=C(C(=C3C4=C(C(=C(C=C4C1OC2)OC)OC)OC)O)OC)OC
SMILES (Isomeric) C[C@@H]1[C@H]2CC3=CC(=C(C(=C3C4=C(C(=C(C=C4[C@@H]1OC2)OC)OC)OC)O)OC)OC
InChI InChI=1S/C23H28O7/c1-11-13-7-12-8-15(25-2)21(27-4)19(24)17(12)18-14(20(11)30-10-13)9-16(26-3)22(28-5)23(18)29-6/h8-9,11,13,20,24H,7,10H2,1-6H3/t11-,13+,20-/m1/s1
InChI Key JLMUSMSEIUWJJB-POEZALAKSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C23H28O7
Molecular Weight 416.50 g/mol
Exact Mass 416.18350323 g/mol
Topological Polar Surface Area (TPSA) 75.60 Ų
XlogP 3.60
Atomic LogP (AlogP) 3.98
H-Bond Acceptor 7
H-Bond Donor 1
Rotatable Bonds 5

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of Pyramidatin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9847 98.47%
Caco-2 + 0.8798 87.98%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability - 0.5000 50.00%
Subcellular localzation Mitochondria 0.5952 59.52%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8553 85.53%
OATP1B3 inhibitior + 0.9606 96.06%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior + 0.7937 79.37%
P-glycoprotein inhibitior - 0.4515 45.15%
P-glycoprotein substrate - 0.6373 63.73%
CYP3A4 substrate + 0.6263 62.63%
CYP2C9 substrate - 0.7970 79.70%
CYP2D6 substrate + 0.4515 45.15%
CYP3A4 inhibition - 0.6899 68.99%
CYP2C9 inhibition + 0.6933 69.33%
CYP2C19 inhibition + 0.7111 71.11%
CYP2D6 inhibition - 0.8120 81.20%
CYP1A2 inhibition + 0.9004 90.04%
CYP2C8 inhibition + 0.5821 58.21%
CYP inhibitory promiscuity + 0.7840 78.40%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9308 93.08%
Carcinogenicity (trinary) Non-required 0.4917 49.17%
Eye corrosion - 0.9904 99.04%
Eye irritation - 0.7795 77.95%
Skin irritation - 0.7667 76.67%
Skin corrosion - 0.9660 96.60%
Ames mutagenesis + 0.5346 53.46%
Human Ether-a-go-go-Related Gene inhibition + 0.6872 68.72%
Micronuclear + 0.5200 52.00%
Hepatotoxicity - 0.5822 58.22%
skin sensitisation - 0.8167 81.67%
Respiratory toxicity + 0.6111 61.11%
Reproductive toxicity + 0.6889 68.89%
Mitochondrial toxicity + 0.6875 68.75%
Nephrotoxicity - 0.8245 82.45%
Acute Oral Toxicity (c) III 0.4710 47.10%
Estrogen receptor binding + 0.8013 80.13%
Androgen receptor binding + 0.5965 59.65%
Thyroid receptor binding + 0.8374 83.74%
Glucocorticoid receptor binding + 0.7887 78.87%
Aromatase binding - 0.5000 50.00%
PPAR gamma + 0.6961 69.61%
Honey bee toxicity - 0.8578 85.78%
Biodegradation - 0.9500 95.00%
Crustacea aquatic toxicity + 0.6951 69.51%
Fish aquatic toxicity + 0.9540 95.40%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.32% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.07% 96.09%
CHEMBL1293249 Q13887 Kruppel-like factor 5 94.13% 86.33%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 92.99% 85.14%
CHEMBL217 P14416 Dopamine D2 receptor 90.39% 95.62%
CHEMBL1806 P11388 DNA topoisomerase II alpha 86.71% 89.00%
CHEMBL241 Q14432 Phosphodiesterase 3A 86.14% 92.94%
CHEMBL2581 P07339 Cathepsin D 85.58% 98.95%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 84.36% 95.89%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 84.09% 97.21%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 83.36% 94.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.21% 95.56%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 81.92% 97.14%
CHEMBL2335 P42785 Lysosomal Pro-X carboxypeptidase 81.74% 100.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 81.62% 95.89%
CHEMBL3192 Q9BY41 Histone deacetylase 8 81.44% 93.99%
CHEMBL2056 P21728 Dopamine D1 receptor 81.33% 91.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.91% 99.17%
CHEMBL2535 P11166 Glucose transporter 80.13% 98.75%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Magnolia fraseri

Cross-Links

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PubChem 101099879
LOTUS LTS0088914
wikiData Q105130910