Pendulin

Details

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Internal ID 5604dc59-46d3-4763-aafa-0c0fd6875b99
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Flavonoid O-glycosides
IUPAC Name 5-hydroxy-3,6,7-trimethoxy-2-[4-[(2S,5S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphenyl]chromen-4-one
SMILES (Canonical) COC1=C(C(=C2C(=C1)OC(=C(C2=O)OC)C3=CC=C(C=C3)OC4C(C(C(C(O4)CO)O)O)O)O)OC
SMILES (Isomeric) COC1=C(C(=C2C(=C1)OC(=C(C2=O)OC)C3=CC=C(C=C3)O[C@H]4C(C([C@@H](C(O4)CO)O)O)O)O)OC
InChI InChI=1S/C24H26O12/c1-31-13-8-12-15(17(27)22(13)32-2)18(28)23(33-3)21(35-12)10-4-6-11(7-5-10)34-24-20(30)19(29)16(26)14(9-25)36-24/h4-8,14,16,19-20,24-27,29-30H,9H2,1-3H3/t14?,16-,19?,20?,24-/m1/s1
InChI Key ASCBRLGHWVZBMG-UUXPKHDWSA-N
Popularity 11 references in papers

Physical and Chemical Properties

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Molecular Formula C24H26O12
Molecular Weight 506.50 g/mol
Exact Mass 506.14242626 g/mol
Topological Polar Surface Area (TPSA) 174.00 Ų
XlogP 1.30
Atomic LogP (AlogP) 0.37
H-Bond Acceptor 12
H-Bond Donor 5
Rotatable Bonds 7

Synonyms

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LMPK12112842

2D Structure

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2D Structure of Pendulin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5088 50.88%
Caco-2 - 0.8435 84.35%
Blood Brain Barrier - 0.8750 87.50%
Human oral bioavailability - 0.6000 60.00%
Subcellular localzation Mitochondria 0.6030 60.30%
OATP2B1 inhibitior - 0.8520 85.20%
OATP1B1 inhibitior + 0.9170 91.70%
OATP1B3 inhibitior + 0.9480 94.80%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 0.5786 57.86%
P-glycoprotein inhibitior + 0.6357 63.57%
P-glycoprotein substrate - 0.6601 66.01%
CYP3A4 substrate + 0.6286 62.86%
CYP2C9 substrate - 0.8485 84.85%
CYP2D6 substrate - 0.8501 85.01%
CYP3A4 inhibition - 0.9371 93.71%
CYP2C9 inhibition - 0.9410 94.10%
CYP2C19 inhibition - 0.9438 94.38%
CYP2D6 inhibition - 0.9518 95.18%
CYP1A2 inhibition - 0.9134 91.34%
CYP2C8 inhibition + 0.7769 77.69%
CYP inhibitory promiscuity - 0.7474 74.74%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.7050 70.50%
Eye corrosion - 0.9899 98.99%
Eye irritation - 0.9124 91.24%
Skin irritation - 0.8406 84.06%
Skin corrosion - 0.9638 96.38%
Ames mutagenesis - 0.5264 52.64%
Human Ether-a-go-go-Related Gene inhibition - 0.4833 48.33%
Micronuclear + 0.6433 64.33%
Hepatotoxicity - 0.6875 68.75%
skin sensitisation - 0.9409 94.09%
Respiratory toxicity + 0.5444 54.44%
Reproductive toxicity + 0.7889 78.89%
Mitochondrial toxicity - 0.5875 58.75%
Nephrotoxicity - 0.9167 91.67%
Acute Oral Toxicity (c) III 0.6685 66.85%
Estrogen receptor binding + 0.7893 78.93%
Androgen receptor binding + 0.6594 65.94%
Thyroid receptor binding + 0.5598 55.98%
Glucocorticoid receptor binding + 0.6615 66.15%
Aromatase binding + 0.5924 59.24%
PPAR gamma + 0.7431 74.31%
Honey bee toxicity - 0.7727 77.27%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity - 0.6449 64.49%
Fish aquatic toxicity + 0.7605 76.05%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.36% 91.11%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 97.94% 94.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 94.91% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.71% 96.09%
CHEMBL2581 P07339 Cathepsin D 94.13% 98.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 93.72% 99.17%
CHEMBL1293249 Q13887 Kruppel-like factor 5 93.29% 86.33%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 91.99% 85.14%
CHEMBL220 P22303 Acetylcholinesterase 89.85% 94.45%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 87.73% 96.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 87.41% 94.45%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 86.68% 86.92%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 86.39% 99.15%
CHEMBL3401 O75469 Pregnane X receptor 86.37% 94.73%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.33% 95.56%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 86.07% 95.64%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.78% 95.89%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.38% 97.09%
CHEMBL4208 P20618 Proteasome component C5 81.63% 90.00%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 81.21% 95.89%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 80.38% 92.62%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 80.22% 96.21%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Aconitum japonicum subsp. subcuneatum
Cocculus pendulus
Isopyrum thalictroides
Leptopus chinensis

Cross-Links

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PubChem 44259755
LOTUS LTS0108099
wikiData Q105260043