pelargonidin-3,5-di-O-beta-D-glucoside

Details

Top
Internal ID 0c17a743-0a56-4067-9bc5-75dfe155f6d4
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Flavonoid O-glycosides > Flavonoid-3-O-glycosides
IUPAC Name 2-(4-hydroxyphenyl)-3,5-bis[[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy]chromen-7-one
SMILES (Canonical) C1=CC(=CC=C1C2=C(C=C3C(=CC(=O)C=C3OC4C(C(C(C(O4)CO)O)O)O)O2)OC5C(C(C(C(O5)CO)O)O)O)O
SMILES (Isomeric) C1=CC(=CC=C1C2=C(C=C3C(=CC(=O)C=C3O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O2)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)O
InChI InChI=1S/C27H30O15/c28-8-17-19(32)21(34)23(36)26(41-17)39-15-6-12(31)5-14-13(15)7-16(25(38-14)10-1-3-11(30)4-2-10)40-27-24(37)22(35)20(33)18(9-29)42-27/h1-7,17-24,26-30,32-37H,8-9H2/t17-,18-,19-,20-,21+,22+,23-,24-,26-,27-/m1/s1
InChI Key DVEHRCKXTZYDME-ZOTFFYTFSA-N
Popularity 5 references in papers

Physical and Chemical Properties

Top
Molecular Formula C27H30O15
Molecular Weight 594.50 g/mol
Exact Mass 594.15847025 g/mol
Topological Polar Surface Area (TPSA) 245.00 Ų
XlogP -2.60
Atomic LogP (AlogP) -2.53
H-Bond Acceptor 15
H-Bond Donor 9
Rotatable Bonds 7

Synonyms

Top
CHEBI:57503
an anthocyanidin 3,5-di-O-beta-D-glucoside
2-(4-hydroxyphenyl)-3,5-bis[[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy]chromen-7-one

2D Structure

Top
2D Structure of pelargonidin-3,5-di-O-beta-D-glucoside

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5485 54.85%
Caco-2 - 0.9248 92.48%
Blood Brain Barrier - 0.6750 67.50%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.5848 58.48%
OATP2B1 inhibitior - 0.5574 55.74%
OATP1B1 inhibitior + 0.8886 88.86%
OATP1B3 inhibitior + 0.9470 94.70%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 0.7964 79.64%
P-glycoprotein inhibitior - 0.5000 50.00%
P-glycoprotein substrate - 0.8287 82.87%
CYP3A4 substrate + 0.5965 59.65%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8415 84.15%
CYP3A4 inhibition - 0.9390 93.90%
CYP2C9 inhibition - 0.9315 93.15%
CYP2C19 inhibition - 0.9047 90.47%
CYP2D6 inhibition - 0.9458 94.58%
CYP1A2 inhibition - 0.9180 91.80%
CYP2C8 inhibition + 0.7505 75.05%
CYP inhibitory promiscuity - 0.7526 75.26%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6848 68.48%
Eye corrosion - 0.9920 99.20%
Eye irritation - 0.9058 90.58%
Skin irritation - 0.8175 81.75%
Skin corrosion - 0.9674 96.74%
Ames mutagenesis - 0.6100 61.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6668 66.68%
Micronuclear + 0.5592 55.92%
Hepatotoxicity - 0.7696 76.96%
skin sensitisation - 0.8914 89.14%
Respiratory toxicity - 0.5556 55.56%
Reproductive toxicity + 0.6778 67.78%
Mitochondrial toxicity + 0.5375 53.75%
Nephrotoxicity - 0.7105 71.05%
Acute Oral Toxicity (c) IV 0.4763 47.63%
Estrogen receptor binding + 0.7524 75.24%
Androgen receptor binding + 0.6883 68.83%
Thyroid receptor binding - 0.4898 48.98%
Glucocorticoid receptor binding - 0.4690 46.90%
Aromatase binding + 0.5895 58.95%
PPAR gamma + 0.6858 68.58%
Honey bee toxicity - 0.7290 72.90%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.5999 59.99%
Fish aquatic toxicity + 0.6470 64.70%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.68% 91.11%
CHEMBL2581 P07339 Cathepsin D 95.83% 98.95%
CHEMBL1806 P11388 DNA topoisomerase II alpha 93.10% 89.00%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 92.76% 94.00%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 91.16% 96.21%
CHEMBL3060 Q9Y345 Glycine transporter 2 91.12% 99.17%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.79% 86.33%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 89.61% 86.92%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 88.25% 95.78%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 86.99% 99.15%
CHEMBL4040 P28482 MAP kinase ERK2 86.39% 83.82%
CHEMBL3401 O75469 Pregnane X receptor 86.17% 94.73%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 85.93% 96.09%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 85.13% 96.95%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.04% 97.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.91% 95.56%
CHEMBL3194 P02766 Transthyretin 83.18% 90.71%
CHEMBL242 Q92731 Estrogen receptor beta 82.61% 98.35%
CHEMBL5608 Q16288 NT-3 growth factor receptor 81.93% 95.89%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 80.92% 95.64%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.68% 95.89%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Phaseolus vulgaris
Punica granatum

Cross-Links

Top
PubChem 167643
LOTUS LTS0189760
wikiData Q104989932