Paxanthonin

Details

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Internal ID 9323c28c-7800-4c59-ad4c-096a975ce9d4
Taxonomy Organoheterocyclic compounds > Benzopyrans > 1-benzopyrans > Xanthones
IUPAC Name 2-[(1S,4S)-2,2-dimethyl-4-prop-1-en-2-ylcyclopentyl]-1,3,6-trihydroxy-5-methoxyxanthen-9-one
SMILES (Canonical) CC(=C)C1CC(C(C1)(C)C)C2=C(C3=C(C=C2O)OC4=C(C3=O)C=CC(=C4OC)O)O
SMILES (Isomeric) CC(=C)[C@H]1C[C@@H](C(C1)(C)C)C2=C(C3=C(C=C2O)OC4=C(C3=O)C=CC(=C4OC)O)O
InChI InChI=1S/C24H26O6/c1-11(2)12-8-14(24(3,4)10-12)18-16(26)9-17-19(21(18)28)20(27)13-6-7-15(25)23(29-5)22(13)30-17/h6-7,9,12,14,25-26,28H,1,8,10H2,2-5H3/t12-,14+/m0/s1
InChI Key GYBUSKWANOPNPI-GXTWGEPZSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C24H26O6
Molecular Weight 410.50 g/mol
Exact Mass 410.17293854 g/mol
Topological Polar Surface Area (TPSA) 96.20 Ų
XlogP 6.00
Atomic LogP (AlogP) 5.17
H-Bond Acceptor 6
H-Bond Donor 3
Rotatable Bonds 3

Synonyms

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2-[(1S,4S)-2,2-dimethyl-4-(prop-1-en-2-yl)cyclopentyl]-1,3,6-trihydroxy-5-methoxy-9H-xanthen-9-one
CHEBI:71520
Q27139677

2D Structure

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2D Structure of Paxanthonin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9774 97.74%
Caco-2 + 0.4944 49.44%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability + 0.5143 51.43%
Subcellular localzation Mitochondria 0.5840 58.40%
OATP2B1 inhibitior - 0.5679 56.79%
OATP1B1 inhibitior + 0.9218 92.18%
OATP1B3 inhibitior + 0.9213 92.13%
MATE1 inhibitior - 0.8200 82.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior + 0.5513 55.13%
P-glycoprotein inhibitior - 0.4400 44.00%
P-glycoprotein substrate - 0.5285 52.85%
CYP3A4 substrate + 0.6656 66.56%
CYP2C9 substrate - 0.5735 57.35%
CYP2D6 substrate - 0.8194 81.94%
CYP3A4 inhibition + 0.7683 76.83%
CYP2C9 inhibition + 0.6886 68.86%
CYP2C19 inhibition + 0.7729 77.29%
CYP2D6 inhibition - 0.7222 72.22%
CYP1A2 inhibition + 0.6959 69.59%
CYP2C8 inhibition + 0.5545 55.45%
CYP inhibitory promiscuity + 0.8379 83.79%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6231 62.31%
Eye corrosion - 0.9891 98.91%
Eye irritation - 0.6883 68.83%
Skin irritation - 0.7306 73.06%
Skin corrosion - 0.9320 93.20%
Ames mutagenesis + 0.5800 58.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3774 37.74%
Micronuclear - 0.6100 61.00%
Hepatotoxicity + 0.5045 50.45%
skin sensitisation - 0.8057 80.57%
Respiratory toxicity + 0.7778 77.78%
Reproductive toxicity + 0.7667 76.67%
Mitochondrial toxicity + 0.7375 73.75%
Nephrotoxicity - 0.9051 90.51%
Acute Oral Toxicity (c) III 0.3858 38.58%
Estrogen receptor binding + 0.7427 74.27%
Androgen receptor binding + 0.7355 73.55%
Thyroid receptor binding + 0.5323 53.23%
Glucocorticoid receptor binding + 0.8026 80.26%
Aromatase binding + 0.7008 70.08%
PPAR gamma + 0.6857 68.57%
Honey bee toxicity - 0.7395 73.95%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity + 0.5700 57.00%
Fish aquatic toxicity + 1.0000 100.00%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.92% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 98.91% 91.49%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 97.90% 94.45%
CHEMBL1806 P11388 DNA topoisomerase II alpha 96.41% 89.00%
CHEMBL4040 P28482 MAP kinase ERK2 94.96% 83.82%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.06% 95.56%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 91.74% 94.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 89.31% 99.23%
CHEMBL1293249 Q13887 Kruppel-like factor 5 87.35% 86.33%
CHEMBL3137262 O60341 LSD1/CoREST complex 86.31% 97.09%
CHEMBL5608 Q16288 NT-3 growth factor receptor 85.16% 95.89%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 84.89% 97.33%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 84.01% 92.62%
CHEMBL241 Q14432 Phosphodiesterase 3A 82.47% 92.94%
CHEMBL2581 P07339 Cathepsin D 82.18% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 81.39% 96.09%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 81.20% 99.15%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 81.14% 85.14%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 80.27% 96.95%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Hypericum patulum

Cross-Links

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PubChem 70698384
NPASS NPC171816
LOTUS LTS0034987
wikiData Q27139677