Pagoside

Details

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Internal ID a91f07ea-106c-4a59-9c4a-6f5aaafebb0a
Taxonomy Phenylpropanoids and polyketides > Cinnamic acids and derivatives > Hydroxycinnamic acids and derivatives > Hydroxycinnamic acid esters > Coumaric acid esters
IUPAC Name (5E)-4-[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxy-2-methyl-5-[2-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyethylidene]cyclopentene-1-carboxylic acid
SMILES (Canonical) CC1=C(C(=CCOC2C(C(C(C(O2)CO)O)O)O)C(C1)OC(=O)C=CC3=CC=C(C=C3)O)C(=O)O
SMILES (Isomeric) CC1=C(/C(=C\CO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)/C(C1)OC(=O)/C=C/C3=CC=C(C=C3)O)C(=O)O
InChI InChI=1S/C24H28O11/c1-12-10-16(34-18(27)7-4-13-2-5-14(26)6-3-13)15(19(12)23(31)32)8-9-33-24-22(30)21(29)20(28)17(11-25)35-24/h2-8,16-17,20-22,24-26,28-30H,9-11H2,1H3,(H,31,32)/b7-4+,15-8-/t16?,17-,20-,21+,22-,24-/m1/s1
InChI Key CBJNLOVRAFQEQH-VUIINJGZSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C24H28O11
Molecular Weight 492.50 g/mol
Exact Mass 492.16316171 g/mol
Topological Polar Surface Area (TPSA) 183.00 Ų
XlogP -0.50
Atomic LogP (AlogP) -0.14
H-Bond Acceptor 10
H-Bond Donor 6
Rotatable Bonds 8

Synonyms

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668420-44-8
(5E)-4-[(E)-3-(4-hydroxyphenyl)prop-2-enoyl]oxy-2-methyl-5-[2-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyethylidene]cyclopentene-1-carboxylic acid
CHEBI:182054
AKOS040734550
NCGC00385076-01
NCGC00385076-01_C24H28O11_(5E)-5-[2-(beta-D-Glucopyranosyloxy)ethylidene]-4-{[(2E)-3-(4-hydroxyphenyl)-2-propenoyl]oxy}-2-methyl-1-cyclopentene-1-carboxylic acid

2D Structure

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2D Structure of Pagoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5486 54.86%
Caco-2 - 0.8993 89.93%
Blood Brain Barrier - 0.5250 52.50%
Human oral bioavailability - 0.8857 88.57%
Subcellular localzation Mitochondria 0.7902 79.02%
OATP2B1 inhibitior - 0.8465 84.65%
OATP1B1 inhibitior + 0.8440 84.40%
OATP1B3 inhibitior + 0.9482 94.82%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 0.8275 82.75%
P-glycoprotein inhibitior - 0.6260 62.60%
P-glycoprotein substrate - 0.6996 69.96%
CYP3A4 substrate + 0.6237 62.37%
CYP2C9 substrate - 0.6000 60.00%
CYP2D6 substrate - 0.8809 88.09%
CYP3A4 inhibition - 0.9084 90.84%
CYP2C9 inhibition - 0.7710 77.10%
CYP2C19 inhibition - 0.7311 73.11%
CYP2D6 inhibition - 0.8979 89.79%
CYP1A2 inhibition - 0.7677 76.77%
CYP2C8 inhibition + 0.6644 66.44%
CYP inhibitory promiscuity - 0.6733 67.33%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.6961 69.61%
Eye corrosion - 0.9909 99.09%
Eye irritation - 0.9509 95.09%
Skin irritation - 0.8202 82.02%
Skin corrosion - 0.9568 95.68%
Ames mutagenesis - 0.7193 71.93%
Human Ether-a-go-go-Related Gene inhibition + 0.6683 66.83%
Micronuclear - 0.6526 65.26%
Hepatotoxicity - 0.7074 70.74%
skin sensitisation - 0.8415 84.15%
Respiratory toxicity - 0.5111 51.11%
Reproductive toxicity + 0.6889 68.89%
Mitochondrial toxicity + 0.5125 51.25%
Nephrotoxicity + 0.4772 47.72%
Acute Oral Toxicity (c) III 0.6036 60.36%
Estrogen receptor binding + 0.8107 81.07%
Androgen receptor binding + 0.6509 65.09%
Thyroid receptor binding - 0.5178 51.78%
Glucocorticoid receptor binding + 0.5627 56.27%
Aromatase binding - 0.5219 52.19%
PPAR gamma + 0.5810 58.10%
Honey bee toxicity - 0.8133 81.33%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.7300 73.00%
Fish aquatic toxicity + 0.9632 96.32%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.12% 91.11%
CHEMBL1293249 Q13887 Kruppel-like factor 5 93.90% 86.33%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.87% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.85% 95.56%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 91.59% 96.00%
CHEMBL2581 P07339 Cathepsin D 90.80% 98.95%
CHEMBL3137262 O60341 LSD1/CoREST complex 90.73% 97.09%
CHEMBL3401 O75469 Pregnane X receptor 90.04% 94.73%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.85% 89.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 88.37% 99.17%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 88.31% 91.71%
CHEMBL3194 P02766 Transthyretin 84.75% 90.71%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 81.59% 93.00%
CHEMBL3359 P21462 Formyl peptide receptor 1 80.76% 93.56%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.20% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Harpagophytum zeyheri

Cross-Links

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PubChem 45783209
LOTUS LTS0012212
wikiData Q104952434