Naucledine

Details

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Internal ID fd06f73f-5751-45c2-b0bf-39351da0aa7a
Taxonomy Alkaloids and derivatives > Harmala alkaloids
IUPAC Name methyl 5-(4,9-dihydro-3H-pyrido[3,4-b]indol-1-yl)pyridine-3-carboxylate
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C18H15N3O2/c1-23-18(22)12-8-11(9-19-10-12)16-17-14(6-7-20-16)13-4-2-3-5-15(13)21-17/h2-5,8-10,21H,6-7H2,1H3
InChI Key SSKWOROVCMNLCS-UHFFFAOYSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C18H15N3O2
Molecular Weight 305.30 g/mol
Exact Mass 305.116426730 g/mol
Topological Polar Surface Area (TPSA) 67.30 Ų
XlogP 2.50
Atomic LogP (AlogP) 2.74
H-Bond Acceptor 4
H-Bond Donor 1
Rotatable Bonds 2

Synonyms

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26238-84-6
SSKWOROVCMNLCS-UHFFFAOYSA-N
GLXC-25607
methyl 5-(4,9-dihydro-3H-pyrido[3,4-b]indol-1-yl)pyridine-3-carboxylate
Nicotinic acid, 5-(4,9-dihydro-3H-pyrido[3,4-b]indol-1-yl)-, methyl ester
3-Pyridinecarboxylic acid, 5-(4,9-dihydro-3H-pyrido[3,4-b]indol-1-yl)-, methyl ester
Methyl 5-(4,9-dihydro-3H-beta-carbolin-1-yl)nicotinate

2D Structure

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2D Structure of Naucledine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9953 99.53%
Caco-2 + 0.6022 60.22%
Blood Brain Barrier + 0.9000 90.00%
Human oral bioavailability + 0.5571 55.71%
Subcellular localzation Mitochondria 0.8849 88.49%
OATP2B1 inhibitior - 0.8539 85.39%
OATP1B1 inhibitior + 0.8909 89.09%
OATP1B3 inhibitior + 0.9441 94.41%
MATE1 inhibitior - 0.7800 78.00%
OCT2 inhibitior + 0.6000 60.00%
BSEP inhibitior + 0.8469 84.69%
P-glycoprotein inhibitior - 0.5992 59.92%
P-glycoprotein substrate - 0.7303 73.03%
CYP3A4 substrate + 0.6486 64.86%
CYP2C9 substrate - 0.7790 77.90%
CYP2D6 substrate - 0.8468 84.68%
CYP3A4 inhibition + 0.8733 87.33%
CYP2C9 inhibition - 0.6475 64.75%
CYP2C19 inhibition - 0.5797 57.97%
CYP2D6 inhibition - 0.6625 66.25%
CYP1A2 inhibition + 0.8878 88.78%
CYP2C8 inhibition + 0.8009 80.09%
CYP inhibitory promiscuity + 0.5367 53.67%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.7367 73.67%
Eye corrosion - 0.9917 99.17%
Eye irritation - 0.9375 93.75%
Skin irritation - 0.7652 76.52%
Skin corrosion - 0.9378 93.78%
Ames mutagenesis - 0.5900 59.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8028 80.28%
Micronuclear + 0.6000 60.00%
Hepatotoxicity - 0.5073 50.73%
skin sensitisation - 0.8821 88.21%
Respiratory toxicity + 0.7667 76.67%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.8250 82.50%
Nephrotoxicity - 0.8276 82.76%
Acute Oral Toxicity (c) III 0.4997 49.97%
Estrogen receptor binding + 0.9461 94.61%
Androgen receptor binding + 0.5196 51.96%
Thyroid receptor binding + 0.6807 68.07%
Glucocorticoid receptor binding + 0.7996 79.96%
Aromatase binding + 0.7760 77.60%
PPAR gamma + 0.8415 84.15%
Honey bee toxicity - 0.9150 91.50%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity - 0.6000 60.00%
Fish aquatic toxicity - 0.5080 50.80%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL240 Q12809 HERG 98.18% 89.76%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.15% 96.09%
CHEMBL2535 P11166 Glucose transporter 96.34% 98.75%
CHEMBL1951 P21397 Monoamine oxidase A 96.01% 91.49%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 94.26% 91.11%
CHEMBL2581 P07339 Cathepsin D 91.18% 98.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 89.31% 99.17%
CHEMBL4225 P49760 Dual specificity protein kinase CLK2 88.25% 80.96%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 86.70% 99.23%
CHEMBL2095172 P14867 GABA-A receptor; alpha-1/beta-2/gamma-2 86.25% 92.67%
CHEMBL2094127 P06493 Cyclin-dependent kinase 1/cyclin B 85.37% 96.00%
CHEMBL5028 O14672 ADAM10 85.31% 97.50%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 85.18% 94.00%
CHEMBL2002 P12268 Inosine-5'-monophosphate dehydrogenase 2 84.77% 98.21%
CHEMBL1287628 Q9Y5S8 NADPH oxidase 1 84.67% 95.48%
CHEMBL4145 Q9UKV0 Histone deacetylase 9 83.52% 85.49%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.23% 95.56%
CHEMBL3902 P09211 Glutathione S-transferase Pi 82.37% 93.81%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.06% 86.33%
CHEMBL255 P29275 Adenosine A2b receptor 80.15% 98.59%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Nauclea diderrichii

Cross-Links

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PubChem 627757
LOTUS LTS0172283
wikiData Q105259752