Nardostachin

Details

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Internal ID 7786f239-0b72-48cb-a978-376146770282
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Monoterpenoids > Iridoids and derivatives
IUPAC Name [(1S,4aS,6S,7R,7aS)-6-hydroxy-7-methyl-1-(3-methylbutanoyloxy)-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate
SMILES (Canonical) CC1C(CC2C1C(OC=C2COC(=O)CC(C)C)OC(=O)CC(C)C)O
SMILES (Isomeric) C[C@H]1[C@H](C[C@H]2[C@@H]1[C@@H](OC=C2COC(=O)CC(C)C)OC(=O)CC(C)C)O
InChI InChI=1S/C20H32O6/c1-11(2)6-17(22)24-9-14-10-25-20(26-18(23)7-12(3)4)19-13(5)16(21)8-15(14)19/h10-13,15-16,19-21H,6-9H2,1-5H3/t13-,15+,16-,19+,20-/m0/s1
InChI Key XNBHVNRFMHXLMZ-ODLFONTESA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C20H32O6
Molecular Weight 368.50 g/mol
Exact Mass 368.21988874 g/mol
Topological Polar Surface Area (TPSA) 82.10 Ų
XlogP 3.00
Atomic LogP (AlogP) 3.04
H-Bond Acceptor 6
H-Bond Donor 1
Rotatable Bonds 7

Synonyms

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114687-82-0
(-)-Nardostachin
Butanoic acid, 3-methyl-, (1,4a,5,6,7,7a-hexahydro-6-hydroxy-7-methyl-1-(3-methyl-1-oxobutoxy)cyclopenta(c)pyran-4-yl)methyl ester, (1S-(1alpha,4aalpha,6alpha,7alpha,7aalpha))-
Butanoic acid, 3-methyl-, [1,4a,5,6,7,7a-hexahydro-6-hydroxy-7-methyl-1-(3-methyl-1-oxobutoxy)cyclopenta[c]pyran-4-yl]methyl ester, [1S-(1alpha,4aalpha,6alpha,7alpha,7aalpha)]-
Nardostachin, (-)-
EGX9ZFG846
[(1S,4aS,6S,7R,7aS)-6-hydroxy-7-methyl-1-(3-methylbutanoyloxy)-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate
DTXSID80150830
[(1S,4aS,6S,7R,7aS)-1,4a,5,6,7,7a-Hexahydro-6-hydroxy-7-methyl-1-(3-methyl-1-oxobutoxy)cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate
Butanoic acid, 3-methyl-, [(1S,4aS,6S,7R,7aS)-1,4a,5,6,7,7a-hexahydro-6-hydroxy-7-methyl-1-(3-methyl-1-oxobutoxy)cyclopenta[c]pyran-4-yl]methyl ester

2D Structure

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2D Structure of Nardostachin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9859 98.59%
Caco-2 - 0.5573 55.73%
Blood Brain Barrier + 0.6750 67.50%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Mitochondria 0.7565 75.65%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.7770 77.70%
OATP1B3 inhibitior + 0.9405 94.05%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior - 0.6300 63.00%
P-glycoprotein inhibitior - 0.6563 65.63%
P-glycoprotein substrate - 0.6963 69.63%
CYP3A4 substrate + 0.5813 58.13%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8409 84.09%
CYP3A4 inhibition - 0.6965 69.65%
CYP2C9 inhibition - 0.8197 81.97%
CYP2C19 inhibition - 0.8439 84.39%
CYP2D6 inhibition - 0.9309 93.09%
CYP1A2 inhibition - 0.6542 65.42%
CYP2C8 inhibition - 0.7911 79.11%
CYP inhibitory promiscuity - 0.9146 91.46%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 0.9113 91.13%
Carcinogenicity (trinary) Non-required 0.6771 67.71%
Eye corrosion - 0.9820 98.20%
Eye irritation - 0.9253 92.53%
Skin irritation - 0.6343 63.43%
Skin corrosion - 0.9487 94.87%
Ames mutagenesis + 0.5346 53.46%
Human Ether-a-go-go-Related Gene inhibition - 0.4351 43.51%
Micronuclear - 0.7400 74.00%
Hepatotoxicity + 0.5678 56.78%
skin sensitisation - 0.7468 74.68%
Respiratory toxicity + 0.6333 63.33%
Reproductive toxicity + 0.7000 70.00%
Mitochondrial toxicity + 0.7125 71.25%
Nephrotoxicity - 0.7944 79.44%
Acute Oral Toxicity (c) III 0.5270 52.70%
Estrogen receptor binding + 0.6227 62.27%
Androgen receptor binding + 0.5356 53.56%
Thyroid receptor binding - 0.5335 53.35%
Glucocorticoid receptor binding + 0.6122 61.22%
Aromatase binding - 0.5203 52.03%
PPAR gamma - 0.6299 62.99%
Honey bee toxicity - 0.8323 83.23%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.6655 66.55%
Fish aquatic toxicity + 0.9678 96.78%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.77% 96.09%
CHEMBL4040 P28482 MAP kinase ERK2 96.57% 83.82%
CHEMBL3137262 O60341 LSD1/CoREST complex 94.12% 97.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 89.73% 91.11%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 89.14% 97.21%
CHEMBL3060 Q9Y345 Glycine transporter 2 88.22% 99.17%
CHEMBL2581 P07339 Cathepsin D 87.80% 98.95%
CHEMBL1806 P11388 DNA topoisomerase II alpha 86.94% 89.00%
CHEMBL253 P34972 Cannabinoid CB2 receptor 86.42% 97.25%
CHEMBL3401 O75469 Pregnane X receptor 82.14% 94.73%
CHEMBL2996 Q05655 Protein kinase C delta 81.02% 97.79%
CHEMBL340 P08684 Cytochrome P450 3A4 80.89% 91.19%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.81% 86.33%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 80.42% 96.95%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.26% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Humulus scandens
Kopsia flavida
Nardostachys jatamansi
Patrinia saniculifolia
Ribes sanguineum
Stachys chinensis
Valeriana microphylla

Cross-Links

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PubChem 196699
NPASS NPC253619
LOTUS LTS0155162
wikiData Q83017033