Lysophosphatidylcholine

Details

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Internal ID ef1e2564-2a85-4ac5-b705-1b5c34bf6b75
Taxonomy Lipids and lipid-like molecules > Glycerophospholipids > Glycerophosphocholines > Lysophosphatidylcholines > 1-acyl-sn-glycero-3-phosphocholines
IUPAC Name [(2R)-3-acetyloxy-2-hydroxypropyl] 2-(trimethylazaniumyl)ethyl phosphate
SMILES (Canonical) CC(=O)OCC(COP(=O)([O-])OCC[N+](C)(C)C)O
SMILES (Isomeric) CC(=O)OC[C@H](COP(=O)([O-])OCC[N+](C)(C)C)O
InChI InChI=1S/C10H22NO7P/c1-9(12)16-7-10(13)8-18-19(14,15)17-6-5-11(2,3)4/h10,13H,5-8H2,1-4H3/t10-/m1/s1
InChI Key RYCNUMLMNKHWPZ-SNVBAGLBSA-N
Popularity 5,072 references in papers

Physical and Chemical Properties

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Molecular Formula C10H22NO7P
Molecular Weight 299.26 g/mol
Exact Mass 299.11338904 g/mol
Topological Polar Surface Area (TPSA) 105.00 Ų
XlogP -1.80
Atomic LogP (AlogP) -0.88
H-Bond Acceptor 7
H-Bond Donor 1
Rotatable Bonds 9

Synonyms

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Lysophosphatidylcholines
9008-30-4
1-acetyl-sn-glycero-3-phosphocholine
UNII-CQD833204Z
Lysophosphatidylcholine, soybean
CQD833204Z
[(2R)-3-acetyloxy-2-hydroxypropyl] 2-(trimethylazaniumyl)ethyl phosphate
EINECS 232-715-0
PC(2:0/0:0)
GTPL2508
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Lysophosphatidylcholine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.9517 95.17%
Caco-2 - 0.6168 61.68%
Blood Brain Barrier - 0.5000 50.00%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Mitochondria 0.4493 44.93%
OATP2B1 inhibitior - 0.8517 85.17%
OATP1B1 inhibitior + 0.9588 95.88%
OATP1B3 inhibitior + 0.9407 94.07%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior - 0.9228 92.28%
P-glycoprotein inhibitior - 0.8647 86.47%
P-glycoprotein substrate - 0.7988 79.88%
CYP3A4 substrate + 0.5129 51.29%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8377 83.77%
CYP3A4 inhibition - 0.8945 89.45%
CYP2C9 inhibition - 0.8724 87.24%
CYP2C19 inhibition - 0.8225 82.25%
CYP2D6 inhibition - 0.9165 91.65%
CYP1A2 inhibition - 0.8937 89.37%
CYP2C8 inhibition - 0.9038 90.38%
CYP inhibitory promiscuity - 0.9928 99.28%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.5800 58.00%
Carcinogenicity (trinary) Non-required 0.5851 58.51%
Eye corrosion - 0.8906 89.06%
Eye irritation - 0.5974 59.74%
Skin irritation - 0.7773 77.73%
Skin corrosion - 0.9202 92.02%
Ames mutagenesis - 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6650 66.50%
Micronuclear + 0.5200 52.00%
Hepatotoxicity - 0.9000 90.00%
skin sensitisation - 0.8275 82.75%
Respiratory toxicity + 0.5778 57.78%
Reproductive toxicity - 0.6222 62.22%
Mitochondrial toxicity + 0.8125 81.25%
Nephrotoxicity + 0.6611 66.11%
Acute Oral Toxicity (c) III 0.5596 55.96%
Estrogen receptor binding - 0.5496 54.96%
Androgen receptor binding - 0.6806 68.06%
Thyroid receptor binding - 0.6200 62.00%
Glucocorticoid receptor binding - 0.7449 74.49%
Aromatase binding - 0.8059 80.59%
PPAR gamma - 0.6703 67.03%
Honey bee toxicity - 0.7166 71.66%
Biodegradation - 0.6250 62.50%
Crustacea aquatic toxicity - 0.7200 72.00%
Fish aquatic toxicity - 0.7420 74.20%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.38% 96.09%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 91.90% 97.29%
CHEMBL2581 P07339 Cathepsin D 90.44% 98.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 85.15% 99.17%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 82.77% 94.33%
CHEMBL3401 O75469 Pregnane X receptor 80.66% 94.73%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 80.55% 85.14%
CHEMBL340 P08684 Cytochrome P450 3A4 80.13% 91.19%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Ferula tenuisecta
Urtica dioica

Cross-Links

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PubChem 5311264
LOTUS LTS0050737
wikiData Q27083304