Limonin 17-beta-D-glucopyranoside

Details

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Internal ID f6d45767-7f2b-42ec-9794-d9fa7b1381ab
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids > Limonoids
IUPAC Name (1R,2R,2'S,5S,6R,7R,10R,13S)-5-[(S)-furan-3-yl-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-5,7,11,11-tetramethyl-8,15-dioxospiro[12,16-dioxatetracyclo[8.7.0.01,13.02,7]heptadecane-6,3'-oxirane]-2'-carboxylic acid
SMILES (Canonical) CC1(C2CC(=O)C3(C(C24COC(=O)CC4O1)CCC(C35C(O5)C(=O)O)(C)C(C6=COC=C6)OC7C(C(C(C(O7)CO)O)O)O)C)C
SMILES (Isomeric) C[C@]1(CC[C@H]2[C@]([C@@]13[C@H](O3)C(=O)O)(C(=O)C[C@@H]4[C@@]25COC(=O)C[C@@H]5OC4(C)C)C)[C@H](C6=COC=C6)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O
InChI InChI=1S/C32H42O14/c1-28(2)17-9-18(34)30(4)16(31(17)13-42-20(35)10-19(31)45-28)5-7-29(3,32(30)25(46-32)26(39)40)24(14-6-8-41-12-14)44-27-23(38)22(37)21(36)15(11-33)43-27/h6,8,12,15-17,19,21-25,27,33,36-38H,5,7,9-11,13H2,1-4H3,(H,39,40)/t15-,16+,17+,19+,21-,22+,23-,24+,25-,27+,29+,30+,31-,32-/m1/s1
InChI Key FYIKIBQJAJRKQM-WNCNYDOCSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C32H42O14
Molecular Weight 650.70 g/mol
Exact Mass 650.25745601 g/mol
Topological Polar Surface Area (TPSA) 215.00 Ų
XlogP -0.60
Atomic LogP (AlogP) 0.48
H-Bond Acceptor 13
H-Bond Donor 5
Rotatable Bonds 6

Synonyms

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Limonin 17-beta-D-glucopyranoside
Glucosyl-limonin
limonin 17-beta-D-glucoside
123564-61-4
beta-D-glucosyl-limonin
9553Q8Z7PF
CCRIS 6986
(1R,2R,2'S,5S,6R,7R,10R,13S)-5-[(S)-furan-3-yl-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]-5,7,11,11-tetramethyl-8,15-dioxospiro[12,16-dioxatetracyclo[8.7.0.01,13.02,7]heptadecane-6,3'-oxirane]-2'-carboxylic acid
(3'S,4aS,6aR,8aR,9R,10S,12aR,12bR)-10-[(R)-furan-3-yl(beta-D-glucopyranosyloxy)methyl]-6,6,8a,10-tetramethyl-3,8-dioxodecahydro-3H,6H-spiro[naphtho[1',2':3,4]furo[3,2-c]pyran-9,2'-oxirane]-3'-carboxylic acid
UNII-9553Q8Z7PF
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Limonin 17-beta-D-glucopyranoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6206 62.06%
Caco-2 - 0.8604 86.04%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability - 0.5714 57.14%
Subcellular localzation Mitochondria 0.8106 81.06%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8335 83.35%
OATP1B3 inhibitior + 0.9187 91.87%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.5250 52.50%
BSEP inhibitior + 0.6728 67.28%
P-glycoprotein inhibitior + 0.6931 69.31%
P-glycoprotein substrate + 0.5880 58.80%
CYP3A4 substrate + 0.7006 70.06%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8694 86.94%
CYP3A4 inhibition - 0.6898 68.98%
CYP2C9 inhibition - 0.7757 77.57%
CYP2C19 inhibition - 0.8106 81.06%
CYP2D6 inhibition - 0.9366 93.66%
CYP1A2 inhibition - 0.8677 86.77%
CYP2C8 inhibition + 0.6374 63.74%
CYP inhibitory promiscuity - 0.9283 92.83%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6156 61.56%
Eye corrosion - 0.9893 98.93%
Eye irritation - 0.8948 89.48%
Skin irritation - 0.7343 73.43%
Skin corrosion - 0.9391 93.91%
Ames mutagenesis - 0.6840 68.40%
Human Ether-a-go-go-Related Gene inhibition + 0.7366 73.66%
Micronuclear - 0.7200 72.00%
Hepatotoxicity - 0.6375 63.75%
skin sensitisation - 0.9142 91.42%
Respiratory toxicity + 0.7000 70.00%
Reproductive toxicity + 0.7556 75.56%
Mitochondrial toxicity + 0.6125 61.25%
Nephrotoxicity - 0.5911 59.11%
Acute Oral Toxicity (c) I 0.4933 49.33%
Estrogen receptor binding + 0.7412 74.12%
Androgen receptor binding + 0.8067 80.67%
Thyroid receptor binding - 0.5281 52.81%
Glucocorticoid receptor binding + 0.7574 75.74%
Aromatase binding + 0.6959 69.59%
PPAR gamma + 0.7187 71.87%
Honey bee toxicity - 0.7172 71.72%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.6650 66.50%
Fish aquatic toxicity + 0.9712 97.12%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.37% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.19% 91.11%
CHEMBL2581 P07339 Cathepsin D 95.68% 98.95%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 94.09% 85.14%
CHEMBL221 P23219 Cyclooxygenase-1 93.24% 90.17%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.26% 97.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.65% 95.56%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 89.27% 94.45%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.98% 95.89%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 85.95% 96.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 85.66% 86.33%
CHEMBL1806 P11388 DNA topoisomerase II alpha 85.60% 89.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 84.43% 99.23%
CHEMBL2335 P42785 Lysosomal Pro-X carboxypeptidase 82.98% 100.00%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 82.51% 95.83%
CHEMBL1994 P08235 Mineralocorticoid receptor 81.84% 100.00%
CHEMBL5028 O14672 ADAM10 81.33% 97.50%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 80.80% 94.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Citrus × aurantium
Citrus hystrix
Citrus medica

Cross-Links

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PubChem 24820753
LOTUS LTS0198378
wikiData Q76512680