Ibogamine

Details

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Internal ID d5cb1b36-4d48-4518-b7a6-963e8466b3a0
Taxonomy Alkaloids and derivatives > Ibogan-type alkaloids
IUPAC Name (1R,15R,17S,18S)-17-ethyl-3,13-diazapentacyclo[13.3.1.02,10.04,9.013,18]nonadeca-2(10),4,6,8-tetraene
SMILES (Canonical) CCC1CC2CC3C1N(C2)CCC4=C3NC5=CC=CC=C45
SMILES (Isomeric) CC[C@H]1C[C@@H]2C[C@@H]3[C@H]1N(C2)CCC4=C3NC5=CC=CC=C45
InChI InChI=1S/C19H24N2/c1-2-13-9-12-10-16-18-15(7-8-21(11-12)19(13)16)14-5-3-4-6-17(14)20-18/h3-6,12-13,16,19-20H,2,7-11H2,1H3/t12-,13+,16+,19+/m1/s1
InChI Key LRLCVRYKAFDXKU-YGOSVGOTSA-N
Popularity 67 references in papers

Physical and Chemical Properties

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Molecular Formula C19H24N2
Molecular Weight 280.40 g/mol
Exact Mass 280.193948774 g/mol
Topological Polar Surface Area (TPSA) 19.00 Ų
XlogP 3.90
Atomic LogP (AlogP) 3.93
H-Bond Acceptor 1
H-Bond Donor 1
Rotatable Bonds 1

Synonyms

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481-87-8
CHEMBL5184088
(-)-ibogamine
NSC 267705
SCHEMBL433382
CHEBI:5853
BDBM50597222
Q5984343
(1R,15R,17S,18S)-17-Ethyl-3,13-diazapentacyclo[13.3.1.02,10.04,9.013,18]nonadeca-2(10),4,6,8-tetraene

2D Structure

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2D Structure of Ibogamine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9943 99.43%
Caco-2 + 0.9684 96.84%
Blood Brain Barrier + 0.9750 97.50%
Human oral bioavailability - 0.7000 70.00%
Subcellular localzation Lysosomes 0.5761 57.61%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8799 87.99%
OATP1B3 inhibitior + 0.9467 94.67%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior + 0.6500 65.00%
BSEP inhibitior - 0.5000 50.00%
P-glycoprotein inhibitior - 0.7663 76.63%
P-glycoprotein substrate + 0.6483 64.83%
CYP3A4 substrate + 0.6170 61.70%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.6580 65.80%
CYP3A4 inhibition - 0.7194 71.94%
CYP2C9 inhibition - 0.8479 84.79%
CYP2C19 inhibition - 0.8614 86.14%
CYP2D6 inhibition + 0.5710 57.10%
CYP1A2 inhibition - 0.6235 62.35%
CYP2C8 inhibition - 0.6603 66.03%
CYP inhibitory promiscuity + 0.5683 56.83%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.7829 78.29%
Eye corrosion - 0.9896 98.96%
Eye irritation - 0.9753 97.53%
Skin irritation - 0.7084 70.84%
Skin corrosion - 0.9237 92.37%
Ames mutagenesis - 0.6900 69.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8793 87.93%
Micronuclear + 0.5500 55.00%
Hepatotoxicity - 0.5250 52.50%
skin sensitisation - 0.8894 88.94%
Respiratory toxicity + 0.9000 90.00%
Reproductive toxicity + 0.9111 91.11%
Mitochondrial toxicity + 0.8750 87.50%
Nephrotoxicity - 0.8537 85.37%
Acute Oral Toxicity (c) II 0.5801 58.01%
Estrogen receptor binding - 0.6361 63.61%
Androgen receptor binding + 0.6477 64.77%
Thyroid receptor binding + 0.5245 52.45%
Glucocorticoid receptor binding - 0.7267 72.67%
Aromatase binding - 0.7454 74.54%
PPAR gamma - 0.5202 52.02%
Honey bee toxicity - 0.8977 89.77%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity + 0.6800 68.00%
Fish aquatic toxicity + 0.9253 92.53%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.02% 96.09%
CHEMBL2581 P07339 Cathepsin D 94.34% 98.95%
CHEMBL255 P29275 Adenosine A2b receptor 93.43% 98.59%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.29% 97.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.30% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.92% 95.56%
CHEMBL253 P34972 Cannabinoid CB2 receptor 90.45% 97.25%
CHEMBL240 Q12809 HERG 90.28% 89.76%
CHEMBL3310 Q96DB2 Histone deacetylase 11 87.22% 88.56%
CHEMBL3192 Q9BY41 Histone deacetylase 8 87.02% 93.99%
CHEMBL3155 P34969 Serotonin 7 (5-HT7) receptor 85.26% 90.71%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 84.33% 94.45%
CHEMBL333 P08253 Matrix metalloproteinase-2 83.75% 96.31%
CHEMBL1907 P15144 Aminopeptidase N 82.10% 93.31%
CHEMBL3902 P09211 Glutathione S-transferase Pi 81.51% 93.81%
CHEMBL2693 Q9UIQ6 Cystinyl aminopeptidase 80.90% 97.64%
CHEMBL206 P03372 Estrogen receptor alpha 80.74% 97.64%
CHEMBL3227 P41594 Metabotropic glutamate receptor 5 80.33% 96.42%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Tabernaemontana calcarea
Tabernaemontana citrifolia
Tabernaemontana divaricata

Cross-Links

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PubChem 100217
LOTUS LTS0030139
wikiData Q5984343