Gymnasterkoreaside B

Details

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Internal ID 68d439ad-34cf-418f-b607-11011e817318
Taxonomy Lipids and lipid-like molecules > Fatty Acyls > Fatty acyl glycosides > Fatty acyl glycosides of mono- and disaccharides
IUPAC Name (2R,3S,4S,5R,6R)-2-[[(2R,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxymethyl]-6-[(E,3R)-3-hydroxydec-8-en-4,6-diynoxy]oxane-3,4,5-triol
SMILES (Canonical) CC=CC#CC#CC(CCOC1C(C(C(C(O1)COC2C(C(CO2)(CO)O)O)O)O)O)O
SMILES (Isomeric) C/C=C/C#CC#C[C@@H](CCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO[C@H]2[C@@H]([C@](CO2)(CO)O)O)O)O)O)O
InChI InChI=1S/C21H30O11/c1-2-3-4-5-6-7-13(23)8-9-29-19-17(26)16(25)15(24)14(32-19)10-30-20-18(27)21(28,11-22)12-31-20/h2-3,13-20,22-28H,8-12H2,1H3/b3-2+/t13-,14+,15+,16-,17+,18-,19+,20+,21+/m0/s1
InChI Key DUYBDGOVGTYZNZ-DOOOCGFBSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C21H30O11
Molecular Weight 458.50 g/mol
Exact Mass 458.17881177 g/mol
Topological Polar Surface Area (TPSA) 179.00 Ų
XlogP -2.50
Atomic LogP (AlogP) -3.40
H-Bond Acceptor 11
H-Bond Donor 7
Rotatable Bonds 8

Synonyms

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(2R,3S,4S,5R,6R)-2-[[(2R,3R,4R)-3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxymethyl]-6-[(E,3R)-3-hydroxydec-8-en-4,6-diynoxy]oxane-3,4,5-triol

2D Structure

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2D Structure of Gymnasterkoreaside B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8823 88.23%
Caco-2 - 0.8598 85.98%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.7571 75.71%
Subcellular localzation Mitochondria 0.7905 79.05%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8761 87.61%
OATP1B3 inhibitior + 0.9535 95.35%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.8000 80.00%
BSEP inhibitior - 0.7169 71.69%
P-glycoprotein inhibitior - 0.6295 62.95%
P-glycoprotein substrate - 0.6082 60.82%
CYP3A4 substrate + 0.6526 65.26%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8480 84.80%
CYP3A4 inhibition - 0.9719 97.19%
CYP2C9 inhibition - 0.9214 92.14%
CYP2C19 inhibition - 0.8905 89.05%
CYP2D6 inhibition - 0.9394 93.94%
CYP1A2 inhibition - 0.9103 91.03%
CYP2C8 inhibition - 0.6023 60.23%
CYP inhibitory promiscuity - 0.9154 91.54%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.6218 62.18%
Eye corrosion - 0.9879 98.79%
Eye irritation - 0.9451 94.51%
Skin irritation - 0.8091 80.91%
Skin corrosion - 0.9426 94.26%
Ames mutagenesis - 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8418 84.18%
Micronuclear - 0.9100 91.00%
Hepatotoxicity - 0.7039 70.39%
skin sensitisation - 0.8932 89.32%
Respiratory toxicity - 0.5556 55.56%
Reproductive toxicity - 0.5444 54.44%
Mitochondrial toxicity - 0.7375 73.75%
Nephrotoxicity - 0.5535 55.35%
Acute Oral Toxicity (c) III 0.4970 49.70%
Estrogen receptor binding + 0.7682 76.82%
Androgen receptor binding - 0.5674 56.74%
Thyroid receptor binding + 0.6056 60.56%
Glucocorticoid receptor binding + 0.5777 57.77%
Aromatase binding + 0.7590 75.90%
PPAR gamma + 0.6879 68.79%
Honey bee toxicity - 0.7799 77.99%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.7568 75.68%
Fish aquatic toxicity - 0.7862 78.62%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.85% 91.11%
CHEMBL226 P30542 Adenosine A1 receptor 93.67% 95.93%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.00% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 90.84% 97.09%
CHEMBL2581 P07339 Cathepsin D 89.85% 98.95%
CHEMBL2955 O95136 Sphingosine 1-phosphate receptor Edg-5 89.27% 92.86%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 88.46% 98.75%
CHEMBL221 P23219 Cyclooxygenase-1 87.68% 90.17%
CHEMBL218 P21554 Cannabinoid CB1 receptor 87.57% 96.61%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 86.50% 96.00%
CHEMBL3401 O75469 Pregnane X receptor 86.09% 94.73%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 84.64% 94.45%
CHEMBL3060 Q9Y345 Glycine transporter 2 84.54% 99.17%
CHEMBL1907 P15144 Aminopeptidase N 83.49% 93.31%
CHEMBL1806 P11388 DNA topoisomerase II alpha 83.46% 89.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.26% 95.89%
CHEMBL4005 P42336 PI3-kinase p110-alpha subunit 82.72% 97.47%
CHEMBL1994 P08235 Mineralocorticoid receptor 82.48% 100.00%
CHEMBL2072 P35499 Sodium channel protein type IV alpha subunit 82.18% 92.32%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 81.68% 95.50%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 80.93% 96.47%
CHEMBL3714130 P46095 G-protein coupled receptor 6 80.28% 97.36%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.08% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Aster koraiensis
Baccharis thesioides
Bonnetia paniculata
Glycosmis ovoidea
Raukaua simplex
Veronica chamaedrys
Vitex agnus-castus

Cross-Links

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PubChem 11091753
NPASS NPC312379
LOTUS LTS0219023
wikiData Q104989675