Gymconopin B

Details

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Internal ID c83c3882-dff4-4d19-abba-94b64ec3b65f
Taxonomy Benzenoids > Phenanthrenes and derivatives > Hydrophenanthrenes
IUPAC Name 3-[(4-hydroxyphenyl)methyl]-2-methoxy-9,10-dihydrophenanthrene-4,5-diol
SMILES (Canonical) COC1=C(C(=C2C(=C1)CCC3=C2C(=CC=C3)O)O)CC4=CC=C(C=C4)O
SMILES (Isomeric) COC1=C(C(=C2C(=C1)CCC3=C2C(=CC=C3)O)O)CC4=CC=C(C=C4)O
InChI InChI=1S/C22H20O4/c1-26-19-12-15-8-7-14-3-2-4-18(24)20(14)21(15)22(25)17(19)11-13-5-9-16(23)10-6-13/h2-6,9-10,12,23-25H,7-8,11H2,1H3
InChI Key WZPDRMHOGQFMFP-UHFFFAOYSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C22H20O4
Molecular Weight 348.40 g/mol
Exact Mass 348.13615911 g/mol
Topological Polar Surface Area (TPSA) 69.90 Ų
XlogP 4.70
Atomic LogP (AlogP) 4.17
H-Bond Acceptor 4
H-Bond Donor 3
Rotatable Bonds 3

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of Gymconopin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9745 97.45%
Caco-2 + 0.5000 50.00%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability - 0.7143 71.43%
Subcellular localzation Mitochondria 0.8683 86.83%
OATP2B1 inhibitior - 0.5705 57.05%
OATP1B1 inhibitior + 0.8300 83.00%
OATP1B3 inhibitior + 0.9561 95.61%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior + 0.8868 88.68%
P-glycoprotein inhibitior - 0.5156 51.56%
P-glycoprotein substrate - 0.6287 62.87%
CYP3A4 substrate + 0.6239 62.39%
CYP2C9 substrate - 0.6180 61.80%
CYP2D6 substrate + 0.5879 58.79%
CYP3A4 inhibition - 0.8076 80.76%
CYP2C9 inhibition + 0.6502 65.02%
CYP2C19 inhibition + 0.7772 77.72%
CYP2D6 inhibition - 0.8607 86.07%
CYP1A2 inhibition + 0.9491 94.91%
CYP2C8 inhibition + 0.8755 87.55%
CYP inhibitory promiscuity + 0.7497 74.97%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.7232 72.32%
Carcinogenicity (trinary) Non-required 0.5313 53.13%
Eye corrosion - 0.9826 98.26%
Eye irritation - 0.5372 53.72%
Skin irritation - 0.6447 64.47%
Skin corrosion - 0.8950 89.50%
Ames mutagenesis - 0.5300 53.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3810 38.10%
Micronuclear - 0.6000 60.00%
Hepatotoxicity - 0.6250 62.50%
skin sensitisation - 0.8570 85.70%
Respiratory toxicity + 0.6111 61.11%
Reproductive toxicity + 0.6556 65.56%
Mitochondrial toxicity + 0.6625 66.25%
Nephrotoxicity - 0.6517 65.17%
Acute Oral Toxicity (c) III 0.6322 63.22%
Estrogen receptor binding + 0.9585 95.85%
Androgen receptor binding + 0.8409 84.09%
Thyroid receptor binding + 0.7170 71.70%
Glucocorticoid receptor binding + 0.8717 87.17%
Aromatase binding + 0.6011 60.11%
PPAR gamma + 0.8215 82.15%
Honey bee toxicity - 0.8580 85.80%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity + 0.6051 60.51%
Fish aquatic toxicity + 0.9442 94.42%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.95% 91.11%
CHEMBL2581 P07339 Cathepsin D 97.70% 98.95%
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 96.96% 95.17%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.39% 96.09%
CHEMBL3192 Q9BY41 Histone deacetylase 8 93.99% 93.99%
CHEMBL3060 Q9Y345 Glycine transporter 2 92.41% 99.17%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.07% 95.56%
CHEMBL2535 P11166 Glucose transporter 91.94% 98.75%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.84% 94.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.74% 86.33%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 90.69% 94.45%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 89.15% 95.89%
CHEMBL5608 Q16288 NT-3 growth factor receptor 89.12% 95.89%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 86.03% 96.95%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 84.69% 95.50%
CHEMBL1255126 O15151 Protein Mdm4 84.49% 90.20%
CHEMBL3820 P35557 Hexokinase type IV 80.87% 91.96%
CHEMBL4208 P20618 Proteasome component C5 80.30% 90.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Gymnadenia conopsea

Cross-Links

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PubChem 11302483
NPASS NPC274176
LOTUS LTS0133280
wikiData Q105323368