Gnemonoside E

Details

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Internal ID 51ea2152-bab5-4462-9199-d0be0ebe967a
Taxonomy Phenylpropanoids and polyketides > 2-arylbenzofuran flavonoids
IUPAC Name (2S,3R,4S,5S,6R)-2-[4-[(E)-2-[(2S,3S)-3-(3,5-dihydroxyphenyl)-6-hydroxy-2-[4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphenyl]-2,3-dihydro-1-benzofuran-4-yl]ethenyl]phenoxy]-6-(hydroxymethyl)oxane-3,4,5-triol
SMILES (Canonical) C1=CC(=CC=C1C=CC2=C3C(C(OC3=CC(=C2)O)C4=CC=C(C=C4)OC5C(C(C(C(O5)CO)O)O)O)C6=CC(=CC(=C6)O)O)OC7C(C(C(C(O7)CO)O)O)O
SMILES (Isomeric) C1=CC(=CC=C1/C=C/C2=C3[C@@H]([C@H](OC3=CC(=C2)O)C4=CC=C(C=C4)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)C6=CC(=CC(=C6)O)O)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O
InChI InChI=1S/C40H42O16/c41-16-28-32(46)34(48)36(50)39(55-28)52-25-7-2-18(3-8-25)1-4-20-11-24(45)15-27-30(20)31(21-12-22(43)14-23(44)13-21)38(54-27)19-5-9-26(10-6-19)53-40-37(51)35(49)33(47)29(17-42)56-40/h1-15,28-29,31-51H,16-17H2/b4-1+/t28-,29-,31+,32-,33-,34+,35+,36-,37-,38-,39-,40-/m1/s1
InChI Key ZYDYBBVQQUAKSD-DLSZBKKWSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C40H42O16
Molecular Weight 778.70 g/mol
Exact Mass 778.24728525 g/mol
Topological Polar Surface Area (TPSA) 269.00 Ų
XlogP 1.80
Atomic LogP (AlogP) 0.60
H-Bond Acceptor 16
H-Bond Donor 11
Rotatable Bonds 10

Synonyms

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(2S,3R,4S,5S,6R)-2-[4-[(E)-2-[(2S,3S)-3-(3,5-dihydroxyphenyl)-6-hydroxy-2-[4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphenyl]-2,3-dihydro-1-benzofuran-4-yl]ethenyl]phenoxy]-6-(hydroxymethyl)oxane-3,4,5-triol

2D Structure

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2D Structure of Gnemonoside E

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.5892 58.92%
Caco-2 - 0.8873 88.73%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.7714 77.14%
Subcellular localzation Mitochondria 0.6106 61.06%
OATP2B1 inhibitior - 0.7111 71.11%
OATP1B1 inhibitior + 0.8636 86.36%
OATP1B3 inhibitior + 0.9649 96.49%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior + 0.8191 81.91%
P-glycoprotein inhibitior + 0.6694 66.94%
P-glycoprotein substrate - 0.8315 83.15%
CYP3A4 substrate + 0.6129 61.29%
CYP2C9 substrate - 0.8137 81.37%
CYP2D6 substrate - 0.8014 80.14%
CYP3A4 inhibition - 0.8884 88.84%
CYP2C9 inhibition - 0.8675 86.75%
CYP2C19 inhibition - 0.7045 70.45%
CYP2D6 inhibition - 0.8053 80.53%
CYP1A2 inhibition - 0.8621 86.21%
CYP2C8 inhibition + 0.7118 71.18%
CYP inhibitory promiscuity + 0.6287 62.87%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.5320 53.20%
Eye corrosion - 0.9923 99.23%
Eye irritation - 0.8946 89.46%
Skin irritation - 0.8137 81.37%
Skin corrosion - 0.9545 95.45%
Ames mutagenesis - 0.5437 54.37%
Human Ether-a-go-go-Related Gene inhibition + 0.8395 83.95%
Micronuclear + 0.6459 64.59%
Hepatotoxicity - 0.8050 80.50%
skin sensitisation - 0.8530 85.30%
Respiratory toxicity - 0.6000 60.00%
Reproductive toxicity + 0.7667 76.67%
Mitochondrial toxicity + 0.6000 60.00%
Nephrotoxicity - 0.5923 59.23%
Acute Oral Toxicity (c) III 0.5369 53.69%
Estrogen receptor binding + 0.7065 70.65%
Androgen receptor binding + 0.6220 62.20%
Thyroid receptor binding + 0.5744 57.44%
Glucocorticoid receptor binding - 0.5471 54.71%
Aromatase binding + 0.5221 52.21%
PPAR gamma + 0.7095 70.95%
Honey bee toxicity - 0.7408 74.08%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.5600 56.00%
Fish aquatic toxicity + 0.9041 90.41%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.58% 91.11%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 95.56% 96.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 95.45% 97.09%
CHEMBL3194 P02766 Transthyretin 92.83% 90.71%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 92.78% 96.09%
CHEMBL3060 Q9Y345 Glycine transporter 2 91.42% 99.17%
CHEMBL3401 O75469 Pregnane X receptor 91.14% 94.73%
CHEMBL226 P30542 Adenosine A1 receptor 90.59% 95.93%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.84% 89.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.57% 86.33%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.52% 95.56%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 86.84% 86.92%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 85.55% 99.15%
CHEMBL4208 P20618 Proteasome component C5 85.33% 90.00%
CHEMBL5339 Q5NUL3 G-protein coupled receptor 120 84.53% 95.78%
CHEMBL3714130 P46095 G-protein coupled receptor 6 84.24% 97.36%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 82.74% 83.57%
CHEMBL1951 P21397 Monoamine oxidase A 82.10% 91.49%
CHEMBL2563 Q9UQL6 Histone deacetylase 5 81.32% 89.67%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Gnetum gnemonoides

Cross-Links

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PubChem 11018178
LOTUS LTS0154131
wikiData Q105386033