Glabratine

Details

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Internal ID 5e111282-5fce-4dea-bc6f-c45a8eb7108e
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > Phenolic glycosides
IUPAC Name methyl (2S,12bS)-2-[(2R)-1-hydroxybut-3-en-2-yl]-8-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-1,2,6,7,12,12b-hexahydroindolo[2,3-a]quinolizine-3-carboxylate
SMILES (Canonical) COC(=O)C1=CN2CCC3=C(C2CC1C(CO)C=C)NC4=C3C(=CC=C4)OC5C(C(C(C(O5)CO)O)O)O
SMILES (Isomeric) COC(=O)C1=CN2CCC3=C([C@@H]2C[C@H]1[C@H](CO)C=C)NC4=C3C(=CC=C4)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O
InChI InChI=1S/C27H34N2O9/c1-3-13(11-30)15-9-18-22-14(7-8-29(18)10-16(15)26(35)36-2)21-17(28-22)5-4-6-19(21)37-27-25(34)24(33)23(32)20(12-31)38-27/h3-6,10,13,15,18,20,23-25,27-28,30-34H,1,7-9,11-12H2,2H3/t13-,15-,18-,20+,23+,24-,25+,27+/m0/s1
InChI Key USUGTFYUSIJKAR-OJIXHNPSSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C27H34N2O9
Molecular Weight 530.60 g/mol
Exact Mass 530.22643067 g/mol
Topological Polar Surface Area (TPSA) 165.00 Ų
XlogP 0.50
Atomic LogP (AlogP) 0.12
H-Bond Acceptor 10
H-Bond Donor 6
Rotatable Bonds 7

Synonyms

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142750-47-8
orb1680651
AKOS040763152
H62969
(2S,12bS)-2-((R)-1-Hydroxymethyl-allyl)-8-((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-hydroxymethyl-tetrahydro-pyran-2-yloxy)-1,2,6,7,12,12b-hexahydro-indolo[2,3-a]quinolizine-3-carboxylic acid methyl ester

2D Structure

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2D Structure of Glabratine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7149 71.49%
Caco-2 - 0.8512 85.12%
Blood Brain Barrier - 0.6750 67.50%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.6297 62.97%
OATP2B1 inhibitior - 0.8587 85.87%
OATP1B1 inhibitior + 0.8856 88.56%
OATP1B3 inhibitior + 0.9258 92.58%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior + 0.8000 80.00%
P-glycoprotein inhibitior + 0.6472 64.72%
P-glycoprotein substrate + 0.6167 61.67%
CYP3A4 substrate + 0.7025 70.25%
CYP2C9 substrate - 0.6072 60.72%
CYP2D6 substrate - 0.8146 81.46%
CYP3A4 inhibition - 0.9392 93.92%
CYP2C9 inhibition - 0.7976 79.76%
CYP2C19 inhibition - 0.8574 85.74%
CYP2D6 inhibition - 0.7704 77.04%
CYP1A2 inhibition - 0.6232 62.32%
CYP2C8 inhibition + 0.6616 66.16%
CYP inhibitory promiscuity - 0.5670 56.70%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.5570 55.70%
Eye corrosion - 0.9854 98.54%
Eye irritation - 0.9527 95.27%
Skin irritation - 0.7582 75.82%
Skin corrosion - 0.9320 93.20%
Ames mutagenesis - 0.5200 52.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8211 82.11%
Micronuclear + 0.7800 78.00%
Hepatotoxicity - 0.7500 75.00%
skin sensitisation - 0.8468 84.68%
Respiratory toxicity + 0.8667 86.67%
Reproductive toxicity + 0.9222 92.22%
Mitochondrial toxicity + 0.9500 95.00%
Nephrotoxicity - 0.7184 71.84%
Acute Oral Toxicity (c) III 0.6296 62.96%
Estrogen receptor binding + 0.7161 71.61%
Androgen receptor binding + 0.6880 68.80%
Thyroid receptor binding - 0.5362 53.62%
Glucocorticoid receptor binding + 0.6032 60.32%
Aromatase binding - 0.5157 51.57%
PPAR gamma + 0.5312 53.12%
Honey bee toxicity - 0.7193 71.93%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity - 0.6100 61.00%
Fish aquatic toxicity + 0.8614 86.14%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 99.71% 96.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 98.45% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.95% 91.11%
CHEMBL2581 P07339 Cathepsin D 95.15% 98.95%
CHEMBL220 P22303 Acetylcholinesterase 93.64% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 89.82% 97.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.45% 95.56%
CHEMBL5028 O14672 ADAM10 89.31% 97.50%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 88.59% 98.75%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 88.46% 96.47%
CHEMBL1991 O14920 Inhibitor of nuclear factor kappa B kinase beta subunit 88.45% 97.15%
CHEMBL5608 Q16288 NT-3 growth factor receptor 87.22% 95.89%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.57% 86.33%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.37% 89.00%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 84.25% 94.33%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 83.74% 95.83%
CHEMBL2535 P11166 Glucose transporter 83.63% 98.75%
CHEMBL3430907 Q96GD4 Aurora kinase B/Inner centromere protein 83.26% 97.50%
CHEMBL3267 P48736 PI3-kinase p110-gamma subunit 81.49% 95.71%
CHEMBL340 P08684 Cytochrome P450 3A4 81.41% 91.19%
CHEMBL3060 Q9Y345 Glycine transporter 2 81.03% 99.17%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Cephalanthus occidentalis

Cross-Links

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PubChem 162967453
LOTUS LTS0142975
wikiData Q105278515