gibberellin A19(2-)

Details

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Internal ID 4926f292-c12d-432f-8991-6874b0bfc316
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Diterpenoids > C20-gibberellins > C20-gibberellin 6-carboxylic acids
IUPAC Name (1S,2S,3S,4R,8R,9R,12S)-8-formyl-12-hydroxy-4-methyl-13-methylidenetetracyclo[10.2.1.01,9.03,8]pentadecane-2,4-dicarboxylate
SMILES (Canonical) CC1(CCCC2(C1C(C34C2CCC(C3)(C(=C)C4)O)C(=O)[O-])C=O)C(=O)[O-]
SMILES (Isomeric) C[C@]1(CCC[C@@]2([C@@H]1[C@@H]([C@]34[C@H]2CC[C@](C3)(C(=C)C4)O)C(=O)[O-])C=O)C(=O)[O-]
InChI InChI=1S/C20H26O6/c1-11-8-19-9-20(11,26)7-4-12(19)18(10-21)6-3-5-17(2,16(24)25)14(18)13(19)15(22)23/h10,12-14,26H,1,3-9H2,2H3,(H,22,23)(H,24,25)/p-2/t12-,13+,14+,17+,18+,19-,20-/m0/s1
InChI Key VNCQCPQAMDQEBY-YTJHIPEWSA-L
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C20H24O6-2
Molecular Weight 360.40 g/mol
Exact Mass 360.15728848 g/mol
Topological Polar Surface Area (TPSA) 118.00 Ų
XlogP 2.00
Atomic LogP (AlogP) -0.41
H-Bond Acceptor 6
H-Bond Donor 1
Rotatable Bonds 3

Synonyms

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CHEBI:58587
Q27104841
(1S,2S,3S,4R,8R,9R,12S)-8-formyl-12-hydroxy-4-methyl-13-methylidenetetracyclo[10.2.1.0(1,9).0(3,8)]pentadecane-2,4-dicarboxylate
(1S,2S,3S,4R,8R,9R,12S)-8-formyl-12-hydroxy-4-methyl-13-methylidenetetracyclo[10.2.1.01,9.03,8]pentadecane-2,4-dicarboxylate
4a-formyl-7alpha-hydroxy-1-methyl-8-methylidene-4aalpha,4bbeta-gibbane-1alpha,10beta-dicarboxylate

2D Structure

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2D Structure of gibberellin A19(2-)

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9704 97.04%
Caco-2 - 0.5296 52.96%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability + 0.6714 67.14%
Subcellular localzation Mitochondria 0.8049 80.49%
OATP2B1 inhibitior - 0.8583 85.83%
OATP1B1 inhibitior + 0.8784 87.84%
OATP1B3 inhibitior + 0.8613 86.13%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior + 0.5626 56.26%
BSEP inhibitior - 0.8654 86.54%
P-glycoprotein inhibitior - 0.9039 90.39%
P-glycoprotein substrate - 0.7404 74.04%
CYP3A4 substrate + 0.6079 60.79%
CYP2C9 substrate - 0.5992 59.92%
CYP2D6 substrate - 0.8678 86.78%
CYP3A4 inhibition - 0.8938 89.38%
CYP2C9 inhibition - 0.9086 90.86%
CYP2C19 inhibition - 0.8735 87.35%
CYP2D6 inhibition - 0.9396 93.96%
CYP1A2 inhibition - 0.8148 81.48%
CYP2C8 inhibition - 0.6684 66.84%
CYP inhibitory promiscuity - 0.9758 97.58%
UGT catelyzed - 0.7000 70.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.5896 58.96%
Eye corrosion - 0.9920 99.20%
Eye irritation - 0.8914 89.14%
Skin irritation + 0.6018 60.18%
Skin corrosion - 0.9195 91.95%
Ames mutagenesis - 0.6700 67.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6184 61.84%
Micronuclear - 0.6900 69.00%
Hepatotoxicity - 0.5073 50.73%
skin sensitisation - 0.7471 74.71%
Respiratory toxicity - 0.5778 57.78%
Reproductive toxicity + 0.9667 96.67%
Mitochondrial toxicity + 0.9625 96.25%
Nephrotoxicity + 0.5478 54.78%
Acute Oral Toxicity (c) III 0.5719 57.19%
Estrogen receptor binding + 0.7704 77.04%
Androgen receptor binding + 0.5864 58.64%
Thyroid receptor binding + 0.6062 60.62%
Glucocorticoid receptor binding + 0.7105 71.05%
Aromatase binding - 0.5000 50.00%
PPAR gamma - 0.6282 62.82%
Honey bee toxicity - 0.9094 90.94%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.6700 67.00%
Fish aquatic toxicity + 1.0000 100.00%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 95.42% 94.45%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.96% 95.56%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.81% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.74% 96.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 88.59% 100.00%
CHEMBL253 P34972 Cannabinoid CB2 receptor 87.54% 97.25%
CHEMBL241 Q14432 Phosphodiesterase 3A 84.02% 92.94%
CHEMBL4227 P25090 Lipoxin A4 receptor 83.53% 100.00%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 82.93% 95.50%
CHEMBL1806 P11388 DNA topoisomerase II alpha 82.51% 89.00%
CHEMBL1937 Q92769 Histone deacetylase 2 81.87% 94.75%
CHEMBL3137262 O60341 LSD1/CoREST complex 81.48% 97.09%
CHEMBL340 P08684 Cytochrome P450 3A4 81.15% 91.19%
CHEMBL4481 P35228 Nitric oxide synthase, inducible 80.94% 94.80%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.90% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Dioscorea japonica
Dioscorea oppositifolia
Dioscorea polystachya
Ipomoea nil
Ipomoea purpurea

Cross-Links

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PubChem 25200921
NPASS NPC298180