Geranyl beta-D-glucopyranoside

Details

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Internal ID d6bd7e3c-f304-4a62-9d0d-b377ea2250be
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides
IUPAC Name (2R,3R,4S,5S,6R)-2-[(2E)-3,7-dimethylocta-2,6-dienoxy]-6-(hydroxymethyl)oxane-3,4,5-triol
SMILES (Canonical) CC(=CCCC(=CCOC1C(C(C(C(O1)CO)O)O)O)C)C
SMILES (Isomeric) CC(=CCC/C(=C/CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)/C)C
InChI InChI=1S/C16H28O6/c1-10(2)5-4-6-11(3)7-8-21-16-15(20)14(19)13(18)12(9-17)22-16/h5,7,12-20H,4,6,8-9H2,1-3H3/b11-7+/t12-,13-,14+,15-,16-/m1/s1
InChI Key RMMXLHZEVYNSJO-QYSJADTOSA-N
Popularity 14 references in papers

Physical and Chemical Properties

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Molecular Formula C16H28O6
Molecular Weight 316.39 g/mol
Exact Mass 316.18858861 g/mol
Topological Polar Surface Area (TPSA) 99.40 Ų
XlogP 1.20
Atomic LogP (AlogP) 0.50
H-Bond Acceptor 6
H-Bond Donor 4
Rotatable Bonds 7

Synonyms

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Geranyl b-D-glucoside
22850-13-1
(2R,3R,4S,5S,6R)-2-[(2E)-3,7-dimethylocta-2,6-dienoxy]-6-(hydroxymethyl)oxane-3,4,5-triol
geranyl beta-D-glucoside
geranyl glucoside
geraniol beta-d-glucopyranoside
SCHEMBL8424804
CHEBI:177422
DTXSID801316488
NCGC00385690-01
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Geranyl beta-D-glucopyranoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.6287 62.87%
Caco-2 - 0.7978 79.78%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Mitochondria 0.8669 86.69%
OATP2B1 inhibitior - 0.8564 85.64%
OATP1B1 inhibitior + 0.9012 90.12%
OATP1B3 inhibitior + 0.8800 88.00%
MATE1 inhibitior - 0.9612 96.12%
OCT2 inhibitior - 0.5250 52.50%
BSEP inhibitior - 0.8924 89.24%
P-glycoprotein inhibitior - 0.9154 91.54%
P-glycoprotein substrate - 0.9635 96.35%
CYP3A4 substrate + 0.5077 50.77%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8353 83.53%
CYP3A4 inhibition - 0.8571 85.71%
CYP2C9 inhibition - 0.8405 84.05%
CYP2C19 inhibition - 0.7572 75.72%
CYP2D6 inhibition - 0.9043 90.43%
CYP1A2 inhibition - 0.8090 80.90%
CYP2C8 inhibition - 0.8720 87.20%
CYP inhibitory promiscuity - 0.9241 92.41%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.7188 71.88%
Eye corrosion - 0.9869 98.69%
Eye irritation - 0.9852 98.52%
Skin irritation - 0.7776 77.76%
Skin corrosion - 0.9656 96.56%
Ames mutagenesis - 0.7300 73.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6689 66.89%
Micronuclear - 0.9400 94.00%
Hepatotoxicity - 0.8665 86.65%
skin sensitisation - 0.8403 84.03%
Respiratory toxicity - 0.8556 85.56%
Reproductive toxicity - 0.5778 57.78%
Mitochondrial toxicity - 0.6375 63.75%
Nephrotoxicity + 0.5360 53.60%
Acute Oral Toxicity (c) III 0.6542 65.42%
Estrogen receptor binding - 0.7185 71.85%
Androgen receptor binding - 0.6473 64.73%
Thyroid receptor binding + 0.5447 54.47%
Glucocorticoid receptor binding - 0.6724 67.24%
Aromatase binding - 0.6050 60.50%
PPAR gamma + 0.5232 52.32%
Honey bee toxicity - 0.7896 78.96%
Biodegradation - 0.6000 60.00%
Crustacea aquatic toxicity - 0.7200 72.00%
Fish aquatic toxicity + 0.8887 88.87%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.93% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.79% 96.09%
CHEMBL3401 O75469 Pregnane X receptor 91.46% 94.73%
CHEMBL4769 O95749 Geranylgeranyl pyrophosphate synthetase 87.15% 92.08%
CHEMBL3060 Q9Y345 Glycine transporter 2 85.89% 99.17%
CHEMBL2581 P07339 Cathepsin D 82.47% 98.95%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 80.12% 91.24%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Rhodiola rosea
Zingiber officinale

Cross-Links

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PubChem 10710515
LOTUS LTS0116837
wikiData Q104375940