Gambirine

Details

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Internal ID e7ded176-6821-4699-a001-1318a05c6d63
Taxonomy Alkaloids and derivatives > Corynanthean-type alkaloids
IUPAC Name methyl (E)-2-[(2S,3R,12bS)-3-ethyl-8-hydroxy-1,2,3,4,6,7,12,12b-octahydroindolo[2,3-a]quinolizin-2-yl]-3-methoxyprop-2-enoate
SMILES (Canonical) CCC1CN2CCC3=C(C2CC1C(=COC)C(=O)OC)NC4=C3C(=CC=C4)O
SMILES (Isomeric) CC[C@H]1CN2CCC3=C([C@@H]2C[C@@H]1/C(=C\OC)/C(=O)OC)NC4=C3C(=CC=C4)O
InChI InChI=1S/C22H28N2O4/c1-4-13-11-24-9-8-14-20-17(6-5-7-19(20)25)23-21(14)18(24)10-15(13)16(12-27-2)22(26)28-3/h5-7,12-13,15,18,23,25H,4,8-11H2,1-3H3/b16-12+/t13-,15-,18-/m0/s1
InChI Key IIRZCWUQUBSIPF-ZZTFNPIZSA-N
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C22H28N2O4
Molecular Weight 384.50 g/mol
Exact Mass 384.20490738 g/mol
Topological Polar Surface Area (TPSA) 74.80 Ų
XlogP 3.10
Atomic LogP (AlogP) 3.52
H-Bond Acceptor 5
H-Bond Donor 2
Rotatable Bonds 4

Synonyms

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QRE9D4HPH8
29472-77-3
CHEMBL5072247
methyl (E)-2-[(2S,3R,12bS)-3-ethyl-8-hydroxy-1,2,3,4,6,7,12,12b-octahydroindolo[2,3-a]quinolizin-2-yl]-3-methoxyprop-2-enoate
Corynan-16-carboxylic acid, 16,17-didehydro-9-hydroxy-17-methoxy-, methyl ester, (16E)-
UNII-QRE9D4HPH8
BDBM50586501
INDOLO(2,3-A)QUINOLIZINE-2-ACETIC ACID, 3-ETHYL-1,2,3,4,6,7,12,12B-OCTAHYDRO-8-HYDROXY-.ALPHA.-(METHOXYMETHYLENE)-, METHYL ESTER, (.ALPHA.E,2S,3R,12BS)-
INDOLO(2,3-A)QUINOLIZINE-2-ACETIC ACID, 3-ETHYL-1,2,3,4,6,7,12,12B-OCTAHYDRO-8-HYDROXY-alpha-(METHOXYMETHYLENE)-, METHYL ESTER, (alphaE,2S,3R,12BS)-

2D Structure

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2D Structure of Gambirine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9348 93.48%
Caco-2 + 0.7553 75.53%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.8429 84.29%
Subcellular localzation Mitochondria 0.6939 69.39%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9182 91.82%
OATP1B3 inhibitior + 0.8772 87.72%
MATE1 inhibitior - 0.6446 64.46%
OCT2 inhibitior - 0.8000 80.00%
BSEP inhibitior + 0.9509 95.09%
P-glycoprotein inhibitior + 0.7381 73.81%
P-glycoprotein substrate + 0.7625 76.25%
CYP3A4 substrate + 0.6602 66.02%
CYP2C9 substrate - 0.5785 57.85%
CYP2D6 substrate - 0.7305 73.05%
CYP3A4 inhibition - 0.8953 89.53%
CYP2C9 inhibition - 0.8150 81.50%
CYP2C19 inhibition - 0.8988 89.88%
CYP2D6 inhibition - 0.5887 58.87%
CYP1A2 inhibition - 0.6944 69.44%
CYP2C8 inhibition + 0.5593 55.93%
CYP inhibitory promiscuity + 0.5269 52.69%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.6064 60.64%
Eye corrosion - 0.9892 98.92%
Eye irritation - 0.9776 97.76%
Skin irritation - 0.7685 76.85%
Skin corrosion - 0.9381 93.81%
Ames mutagenesis + 0.5800 58.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7977 79.77%
Micronuclear + 0.6300 63.00%
Hepatotoxicity + 0.5125 51.25%
skin sensitisation - 0.8735 87.35%
Respiratory toxicity + 0.8333 83.33%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.9500 95.00%
Nephrotoxicity + 0.5563 55.63%
Acute Oral Toxicity (c) III 0.6902 69.02%
Estrogen receptor binding + 0.6763 67.63%
Androgen receptor binding + 0.7572 75.72%
Thyroid receptor binding + 0.5528 55.28%
Glucocorticoid receptor binding + 0.6957 69.57%
Aromatase binding - 0.6840 68.40%
PPAR gamma - 0.5085 50.85%
Honey bee toxicity - 0.8493 84.93%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.5400 54.00%
Fish aquatic toxicity + 0.9681 96.81%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL233 P35372 Mu opioid receptor 105 nM
Ki
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 99.23% 96.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 99.19% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.54% 91.11%
CHEMBL2581 P07339 Cathepsin D 95.34% 98.95%
CHEMBL2041 P07949 Tyrosine-protein kinase receptor RET 94.32% 91.79%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.01% 95.56%
CHEMBL2535 P11166 Glucose transporter 91.88% 98.75%
CHEMBL3137262 O60341 LSD1/CoREST complex 89.73% 97.09%
CHEMBL2073 P07947 Tyrosine-protein kinase YES 85.22% 83.14%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 84.87% 99.23%
CHEMBL3430907 Q96GD4 Aurora kinase B/Inner centromere protein 84.81% 97.50%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 83.77% 93.03%
CHEMBL3060 Q9Y345 Glycine transporter 2 83.54% 99.17%
CHEMBL5028 O14672 ADAM10 81.79% 97.50%
CHEMBL255 P29275 Adenosine A2b receptor 81.30% 98.59%
CHEMBL4072 P07858 Cathepsin B 80.46% 93.67%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 80.08% 94.33%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Uncaria callophylla
Uncaria gambir

Cross-Links

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PubChem 3036945
NPASS NPC293861
LOTUS LTS0156661
wikiData Q104401738