Cyclamigenin D

Details

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Internal ID a71d2f2c-69d4-495e-a3ec-036df9d627ec
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name (1S,4S,5R,8R,10S,13R,14R,17S,18R,20S)-20-(dimethoxymethyl)-10-hydroxy-4,5,9,9,13,20-hexamethyl-24-oxahexacyclo[15.5.2.01,18.04,17.05,14.08,13]tetracosan-2-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C32H52O5/c1-26(2)20-9-13-29(5)21(28(20,4)12-11-23(26)33)10-14-32-22-17-27(3,25(35-7)36-8)15-16-31(22,19-37-32)24(34)18-30(29,32)6/h20-23,25,33H,9-19H2,1-8H3/t20-,21+,22+,23-,27-,28-,29+,30-,31+,32-/m0/s1
InChI Key VJTHGWPCJWOKLN-WIFRURKKSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C32H52O5
Molecular Weight 516.80 g/mol
Exact Mass 516.38147475 g/mol
Topological Polar Surface Area (TPSA) 65.00 Ų
XlogP 5.50
Atomic LogP (AlogP) 6.16
H-Bond Acceptor 5
H-Bond Donor 1
Rotatable Bonds 3

Synonyms

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Cyclamigenin D
Pridentigenin A
DTXSID80942651
3-Hydroxy-29,29-dimethoxy-13,28-epoxyoleanan-16-one

2D Structure

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2D Structure of Cyclamigenin D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9841 98.41%
Caco-2 - 0.6110 61.10%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.5714 57.14%
Subcellular localzation Mitochondria 0.7379 73.79%
OATP2B1 inhibitior - 0.7143 71.43%
OATP1B1 inhibitior + 0.8576 85.76%
OATP1B3 inhibitior + 0.9111 91.11%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior + 0.5508 55.08%
P-glycoprotein inhibitior - 0.5059 50.59%
P-glycoprotein substrate - 0.7130 71.30%
CYP3A4 substrate + 0.7188 71.88%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7985 79.85%
CYP3A4 inhibition - 0.7344 73.44%
CYP2C9 inhibition + 0.5078 50.78%
CYP2C19 inhibition - 0.6983 69.83%
CYP2D6 inhibition - 0.9612 96.12%
CYP1A2 inhibition - 0.7741 77.41%
CYP2C8 inhibition - 0.6048 60.48%
CYP inhibitory promiscuity - 0.9555 95.55%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6442 64.42%
Eye corrosion - 0.9888 98.88%
Eye irritation - 0.9156 91.56%
Skin irritation - 0.6830 68.30%
Skin corrosion - 0.9397 93.97%
Ames mutagenesis - 0.6600 66.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3751 37.51%
Micronuclear - 0.8600 86.00%
Hepatotoxicity - 0.6500 65.00%
skin sensitisation - 0.8866 88.66%
Respiratory toxicity + 0.6667 66.67%
Reproductive toxicity + 0.7556 75.56%
Mitochondrial toxicity + 0.7375 73.75%
Nephrotoxicity + 0.8207 82.07%
Acute Oral Toxicity (c) III 0.3251 32.51%
Estrogen receptor binding + 0.7279 72.79%
Androgen receptor binding + 0.7391 73.91%
Thyroid receptor binding + 0.5920 59.20%
Glucocorticoid receptor binding + 0.7195 71.95%
Aromatase binding + 0.7077 70.77%
PPAR gamma + 0.5690 56.90%
Honey bee toxicity - 0.6340 63.40%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity + 0.6500 65.00%
Fish aquatic toxicity + 0.9566 95.66%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 96.66% 82.69%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.21% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.53% 96.09%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 89.22% 99.23%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 87.13% 94.00%
CHEMBL2581 P07339 Cathepsin D 87.12% 98.95%
CHEMBL3137262 O60341 LSD1/CoREST complex 87.01% 97.09%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 85.97% 92.62%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 85.83% 94.45%
CHEMBL3524 P56524 Histone deacetylase 4 85.42% 92.97%
CHEMBL1937 Q92769 Histone deacetylase 2 85.02% 94.75%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 84.06% 97.14%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 84.01% 95.56%
CHEMBL1994 P08235 Mineralocorticoid receptor 83.83% 100.00%
CHEMBL3351 Q13085 Acetyl-CoA carboxylase 1 81.30% 93.04%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.43% 86.33%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Primula denticulata

Cross-Links

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PubChem 177130
LOTUS LTS0207843
wikiData Q82919658