Columbaridione

Details

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Internal ID b416014c-cc90-40c7-895d-5cdb28e66ca5
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene lactones > Diterpene lactones
IUPAC Name 6-hydroxy-11,11-dimethyl-5-propan-2-yl-16-oxatetracyclo[6.6.2.01,10.02,7]hexadeca-2(7),5-diene-3,4,15-trione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C20H24O5/c1-9(2)12-15(21)13-10-8-11-19(3,4)6-5-7-20(11,18(24)25-10)14(13)17(23)16(12)22/h9-11,21H,5-8H2,1-4H3
InChI Key PCMDDYKLZIZJHI-UHFFFAOYSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C20H24O5
Molecular Weight 344.40 g/mol
Exact Mass 344.16237386 g/mol
Topological Polar Surface Area (TPSA) 80.70 Ų
XlogP 2.50
Atomic LogP (AlogP) 3.04
H-Bond Acceptor 5
H-Bond Donor 1
Rotatable Bonds 1

Synonyms

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6-hydroxy-11,11-dimethyl-5-propan-2-yl-16-oxatetracyclo[6.6.2.01,10.02,7]hexadeca-2(7),5-diene-3,4,15-trione
6-hydroxy-11,11-dimethyl-5-propan-2-yl-16-oxatetracyclo(6.6.2.01,10.02,7)hexadeca-2(7),5-diene-3,4,15-trione
RefChem:127549
CHEBI:174646

2D Structure

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2D Structure of Columbaridione

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9668 96.68%
Caco-2 + 0.7148 71.48%
Blood Brain Barrier + 0.6250 62.50%
Human oral bioavailability - 0.5143 51.43%
Subcellular localzation Mitochondria 0.7857 78.57%
OATP2B1 inhibitior - 0.8586 85.86%
OATP1B1 inhibitior + 0.8741 87.41%
OATP1B3 inhibitior + 0.9143 91.43%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior - 0.5250 52.50%
BSEP inhibitior - 0.7558 75.58%
P-glycoprotein inhibitior - 0.6881 68.81%
P-glycoprotein substrate - 0.8024 80.24%
CYP3A4 substrate + 0.6143 61.43%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8980 89.80%
CYP3A4 inhibition - 0.7546 75.46%
CYP2C9 inhibition - 0.9275 92.75%
CYP2C19 inhibition - 0.9215 92.15%
CYP2D6 inhibition - 0.9441 94.41%
CYP1A2 inhibition - 0.6238 62.38%
CYP2C8 inhibition - 0.8184 81.84%
CYP inhibitory promiscuity - 0.9677 96.77%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.6268 62.68%
Eye corrosion - 0.9926 99.26%
Eye irritation - 0.7746 77.46%
Skin irritation + 0.6158 61.58%
Skin corrosion - 0.9120 91.20%
Ames mutagenesis - 0.5800 58.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8134 81.34%
Micronuclear - 0.7400 74.00%
Hepatotoxicity + 0.5854 58.54%
skin sensitisation - 0.7328 73.28%
Respiratory toxicity - 0.5111 51.11%
Reproductive toxicity + 0.9667 96.67%
Mitochondrial toxicity + 0.7625 76.25%
Nephrotoxicity + 0.7112 71.12%
Acute Oral Toxicity (c) III 0.6488 64.88%
Estrogen receptor binding + 0.7603 76.03%
Androgen receptor binding + 0.6197 61.97%
Thyroid receptor binding + 0.6178 61.78%
Glucocorticoid receptor binding + 0.8294 82.94%
Aromatase binding - 0.5611 56.11%
PPAR gamma + 0.7745 77.45%
Honey bee toxicity - 0.8361 83.61%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.6200 62.00%
Fish aquatic toxicity + 0.9878 98.78%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 97.14% 94.45%
CHEMBL253 P34972 Cannabinoid CB2 receptor 96.08% 97.25%
CHEMBL4685 P14902 Indoleamine 2,3-dioxygenase 95.72% 96.38%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.15% 91.11%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 91.58% 99.23%
CHEMBL1937 Q92769 Histone deacetylase 2 87.02% 94.75%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.13% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 84.99% 97.09%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 83.87% 96.77%
CHEMBL3351 Q13085 Acetyl-CoA carboxylase 1 83.48% 93.04%
CHEMBL1994 P08235 Mineralocorticoid receptor 82.19% 100.00%
CHEMBL3359 P21462 Formyl peptide receptor 1 81.63% 93.56%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 80.73% 96.09%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 80.58% 93.40%
CHEMBL3401 O75469 Pregnane X receptor 80.43% 94.73%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Salvia columbariae
Salvia officinalis

Cross-Links

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PubChem 131752806
LOTUS LTS0039394
wikiData Q105205844