Cinerubin B

Details

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Internal ID 99b849e7-bbe5-40ea-a719-05d82e1a27c3
Taxonomy Phenylpropanoids and polyketides > Anthracyclines
IUPAC Name methyl (1R,2R,4S)-4-[(2R,4S,5S,6S)-4-(dimethylamino)-5-[[(1R,3R,5S,8S,10S,12S,14S)-5,14-dimethyl-6-oxo-2,4,9,13-tetraoxatricyclo[8.4.0.03,8]tetradecan-12-yl]oxy]-6-methyloxan-2-yl]oxy-2-ethyl-2,5,7,10-tetrahydroxy-6,11-dioxo-3,4-dihydro-1H-tetracene-1-carboxylate
SMILES (Canonical) CCC1(CC(C2=C(C3=C(C=C2C1C(=O)OC)C(=O)C4=C(C=CC(=C4C3=O)O)O)O)OC5CC(C(C(O5)C)OC6CC7C(C(O6)C)OC8C(O7)CC(=O)C(O8)C)N(C)C)O
SMILES (Isomeric) CC[C@]1(C[C@@H](C2=C(C3=C(C=C2[C@H]1C(=O)OC)C(=O)C4=C(C=CC(=C4C3=O)O)O)O)O[C@H]5C[C@@H]([C@@H]([C@@H](O5)C)O[C@H]6C[C@H]7[C@@H]([C@@H](O6)C)O[C@H]8[C@@H](O7)CC(=O)[C@@H](O8)C)N(C)C)O
InChI InChI=1S/C42H51NO16/c1-8-42(51)15-27(30-19(34(42)40(50)52-7)11-20-31(36(30)48)37(49)33-23(45)10-9-22(44)32(33)35(20)47)57-28-12-21(43(5)6)38(17(3)53-28)58-29-14-25-39(18(4)54-29)59-41-26(56-25)13-24(46)16(2)55-41/h9-11,16-18,21,25-29,34,38-39,41,44-45,48,51H,8,12-15H2,1-7H3/t16-,17-,18-,21-,25-,26-,27-,28-,29-,34-,38+,39+,41-,42+/m0/s1
InChI Key ZBDDFHXUDIPRSM-DQCCILMQSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C42H51NO16
Molecular Weight 825.80 g/mol
Exact Mass 825.32078454 g/mol
Topological Polar Surface Area (TPSA) 226.00 Ų
XlogP 4.00
Atomic LogP (AlogP) 2.88
H-Bond Acceptor 17
H-Bond Donor 4
Rotatable Bonds 7

Synonyms

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Tauromycetin-III
Tavromycetin III
Antibiotic MA 144B2
Cinerubine B
35906-51-5
MA144 B2
NSC 18335
NSC 62490
1-Naphthacenecarboxylic acid, 4-(((2''',3''-anhydro)-O-3,6-dideoxy-alpha-L-erythro-hexopyranos-4-ulos-1-yl(1-4)-O-2,6-dideoxy-alpha-L-lyxo-hexopyranosyl(1-4)-2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl)oxy)-2-ethyl-1,2,3,4,6,11-hexahydro-2,5,7,10-tetrahydroxy-6,11-dioxo-, methyl ester, (1R-(1-alpha,2-beta,4-beta))-
1-Naphthacenecarboxylic acid, 4-(((2''',3''-anhydro)-O-3,6-dideoxy-alpha-L-erythro-hexopyranos-4-ulos-1-yl-(1-4)-O-2,6-dideoxy-alpha-L-lyxo-hexopyranosyl-(1-4)-2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl)oxy)-2-ethyl-1,2,3,4,6,11-hexahydro-2,5,7,10
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Cinerubin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8271 82.71%
Caco-2 - 0.8624 86.24%
Blood Brain Barrier - 0.9000 90.00%
Human oral bioavailability - 0.7571 75.71%
Subcellular localzation Lysosomes 0.4443 44.43%
OATP2B1 inhibitior - 0.7173 71.73%
OATP1B1 inhibitior + 0.8719 87.19%
OATP1B3 inhibitior + 0.9514 95.14%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.5750 57.50%
BSEP inhibitior + 0.6982 69.82%
P-glycoprotein inhibitior + 0.7621 76.21%
P-glycoprotein substrate + 0.8353 83.53%
CYP3A4 substrate + 0.7325 73.25%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8487 84.87%
CYP3A4 inhibition - 0.7738 77.38%
CYP2C9 inhibition - 0.8613 86.13%
CYP2C19 inhibition - 0.8510 85.10%
CYP2D6 inhibition - 0.8152 81.52%
CYP1A2 inhibition - 0.5000 50.00%
CYP2C8 inhibition + 0.6139 61.39%
CYP inhibitory promiscuity - 0.8394 83.94%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.5668 56.68%
Eye corrosion - 0.9896 98.96%
Eye irritation - 0.9077 90.77%
Skin irritation - 0.8089 80.89%
Skin corrosion - 0.9387 93.87%
Ames mutagenesis + 0.9600 96.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5128 51.28%
Micronuclear + 0.6200 62.00%
Hepatotoxicity + 0.7250 72.50%
skin sensitisation - 0.8939 89.39%
Respiratory toxicity + 0.8111 81.11%
Reproductive toxicity + 0.8778 87.78%
Mitochondrial toxicity + 0.9250 92.50%
Nephrotoxicity - 0.6974 69.74%
Acute Oral Toxicity (c) II 0.5336 53.36%
Estrogen receptor binding + 0.8691 86.91%
Androgen receptor binding + 0.8379 83.79%
Thyroid receptor binding + 0.5213 52.13%
Glucocorticoid receptor binding + 0.8611 86.11%
Aromatase binding + 0.7988 79.88%
PPAR gamma + 0.8074 80.74%
Honey bee toxicity - 0.6803 68.03%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.5200 52.00%
Fish aquatic toxicity + 0.9077 90.77%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.87% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.81% 96.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 96.83% 89.00%
CHEMBL2581 P07339 Cathepsin D 96.48% 98.95%
CHEMBL4685 P14902 Indoleamine 2,3-dioxygenase 93.56% 96.38%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 92.03% 96.21%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.76% 97.09%
CHEMBL4208 P20618 Proteasome component C5 91.13% 90.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 90.38% 95.89%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 89.77% 85.14%
CHEMBL340 P08684 Cytochrome P450 3A4 87.35% 91.19%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.70% 95.56%
CHEMBL2345 P51812 Ribosomal protein S6 kinase alpha 3 85.85% 95.64%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 85.45% 90.71%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 85.11% 94.00%
CHEMBL2553 Q15418 Ribosomal protein S6 kinase alpha 1 85.03% 85.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 84.12% 94.45%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 84.07% 99.23%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 83.84% 92.62%
CHEMBL226 P30542 Adenosine A1 receptor 83.56% 95.93%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.50% 86.33%
CHEMBL3004 P33527 Multidrug resistance-associated protein 1 83.20% 96.37%
CHEMBL3060 Q9Y345 Glycine transporter 2 82.68% 99.17%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 80.34% 92.88%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Allium ampeloprasum
Artemisia gmelinii
Drimia altissima
Helenium amarum
Scutellaria viscidula
Senecio retrorsus
Taxus wallichiana

Cross-Links

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PubChem 73593
NPASS NPC242417
LOTUS LTS0135158
wikiData Q104401992