beta-D-gentiobiosyl crocetin

Details

Top
Internal ID c9c06a1e-881c-45d8-8ff4-5b3b5d824084
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Diterpenoids
IUPAC Name (2E,4E,6E,8E,10E,12E,14E)-2,6,11,15-tetramethyl-16-oxo-16-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxan-2-yl]oxyhexadeca-2,4,6,8,10,12,14-heptaenoic acid
SMILES (Canonical) CC(=CC=CC=C(C)C=CC=C(C)C(=O)OC1C(C(C(C(O1)COC2C(C(C(C(O2)CO)O)O)O)O)O)O)C=CC=C(C)C(=O)O
SMILES (Isomeric) C/C(=C\C=C\C=C(/C)\C=C\C=C(/C)\C(=O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O)O)/C=C/C=C(\C)/C(=O)O
InChI InChI=1S/C32H44O14/c1-17(11-7-13-19(3)29(40)41)9-5-6-10-18(2)12-8-14-20(4)30(42)46-32-28(39)26(37)24(35)22(45-32)16-43-31-27(38)25(36)23(34)21(15-33)44-31/h5-14,21-28,31-39H,15-16H2,1-4H3,(H,40,41)/b6-5+,11-7+,12-8+,17-9+,18-10+,19-13+,20-14+/t21-,22-,23-,24-,25+,26+,27-,28-,31-,32+/m1/s1
InChI Key VULLCGFNYWDRHL-YJOFKXFJSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

Top
Molecular Formula C32H44O14
Molecular Weight 652.70 g/mol
Exact Mass 652.27310607 g/mol
Topological Polar Surface Area (TPSA) 233.00 Ų
XlogP 1.50
Atomic LogP (AlogP) -0.31
H-Bond Acceptor 13
H-Bond Donor 8
Rotatable Bonds 13

Synonyms

Top
beta-D-gentiobiosyl crocetin
55750-85-1
Crocin 3
crocin-3
trans-Crocetin (beta-D-gentiobiosyl) ester
CHEMBL450567
CHEBI:62769
crocetin mono(beta-gentiobiosyl) ester
trans-crocetin beta-D-gentiobiosyl ester
(2E,4E,6E,8E,10E,12E,14E)-2,6,11,15-tetramethyl-16-oxo-16-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxan-2-yl]oxyhexadeca-2,4,6,8,10,12,14-heptaenoic acid
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of beta-D-gentiobiosyl crocetin

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8451 84.51%
Caco-2 - 0.8572 85.72%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability - 0.7000 70.00%
Subcellular localzation Mitochondria 0.7945 79.45%
OATP2B1 inhibitior + 0.5682 56.82%
OATP1B1 inhibitior + 0.8306 83.06%
OATP1B3 inhibitior + 0.9410 94.10%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior + 0.8960 89.60%
P-glycoprotein inhibitior + 0.6867 68.67%
P-glycoprotein substrate - 0.8783 87.83%
CYP3A4 substrate + 0.6070 60.70%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8858 88.58%
CYP3A4 inhibition - 0.9295 92.95%
CYP2C9 inhibition - 0.9011 90.11%
CYP2C19 inhibition - 0.9032 90.32%
CYP2D6 inhibition - 0.9222 92.22%
CYP1A2 inhibition - 0.9389 93.89%
CYP2C8 inhibition - 0.7425 74.25%
CYP inhibitory promiscuity - 0.8758 87.58%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6766 67.66%
Eye corrosion - 0.9884 98.84%
Eye irritation - 0.9199 91.99%
Skin irritation - 0.8195 81.95%
Skin corrosion - 0.9602 96.02%
Ames mutagenesis - 0.7679 76.79%
Human Ether-a-go-go-Related Gene inhibition + 0.6860 68.60%
Micronuclear - 0.6641 66.41%
Hepatotoxicity - 0.7000 70.00%
skin sensitisation - 0.8841 88.41%
Respiratory toxicity - 0.6778 67.78%
Reproductive toxicity + 0.5444 54.44%
Mitochondrial toxicity - 0.5625 56.25%
Nephrotoxicity + 0.5582 55.82%
Acute Oral Toxicity (c) III 0.5725 57.25%
Estrogen receptor binding + 0.7875 78.75%
Androgen receptor binding - 0.6673 66.73%
Thyroid receptor binding + 0.5909 59.09%
Glucocorticoid receptor binding + 0.6943 69.43%
Aromatase binding + 0.5686 56.86%
PPAR gamma + 0.7182 71.82%
Honey bee toxicity - 0.8016 80.16%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.7555 75.55%
Fish aquatic toxicity - 0.3838 38.38%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 92.83% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.14% 91.11%
CHEMBL3401 O75469 Pregnane X receptor 90.09% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.30% 99.17%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 87.00% 96.95%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 86.44% 96.47%
CHEMBL2581 P07339 Cathepsin D 85.84% 98.95%
CHEMBL4005 P42336 PI3-kinase p110-alpha subunit 82.80% 97.47%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.77% 86.33%
CHEMBL1806 P11388 DNA topoisomerase II alpha 82.63% 89.00%
CHEMBL3714130 P46095 G-protein coupled receptor 6 82.46% 97.36%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 82.44% 95.50%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 82.13% 86.92%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 81.23% 98.75%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 80.61% 96.00%
CHEMBL5255 O00206 Toll-like receptor 4 80.30% 92.50%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Crocus sativus
Gardenia jasminoides

Cross-Links

Top
PubChem 10461942
NPASS NPC118077
LOTUS LTS0057823
wikiData Q27132163