Berkeleyone A

Details

Top
Internal ID 47f0f492-d179-4500-a75c-9eb9cff7382f
Taxonomy Lipids and lipid-like molecules > Steroids and steroid derivatives > Hydroxysteroids > 3-hydroxysteroids > 3-alpha-hydroxysteroids
IUPAC Name methyl (1R,2S,5S,7R,10S,11S,13R,15S)-7,15-dihydroxy-2,6,6,10,13,15-hexamethyl-17-methylidene-14,16-dioxotetracyclo[11.3.1.02,11.05,10]heptadecane-1-carboxylate
SMILES (Canonical) CC1(C2CCC3(C(C2(CCC1O)C)CC4(C(=C)C3(C(=O)C(C4=O)(C)O)C(=O)OC)C)C)C
SMILES (Isomeric) C[C@@]12CC[C@H](C([C@H]1CC[C@]3([C@H]2C[C@@]4(C(=C)[C@]3(C(=O)[C@@](C4=O)(C)O)C(=O)OC)C)C)(C)C)O
InChI InChI=1S/C26H38O6/c1-14-23(5)13-16-22(4)11-10-17(27)21(2,3)15(22)9-12-24(16,6)26(14,20(30)32-8)19(29)25(7,31)18(23)28/h15-17,27,31H,1,9-13H2,2-8H3/t15-,16+,17-,22-,23-,24+,25+,26+/m1/s1
InChI Key NNHHTFDBMMPBSL-JFPRQHOTSA-N
Popularity 5 references in papers

Physical and Chemical Properties

Top
Molecular Formula C26H38O6
Molecular Weight 446.60 g/mol
Exact Mass 446.26683893 g/mol
Topological Polar Surface Area (TPSA) 101.00 Ų
XlogP 3.90
Atomic LogP (AlogP) 3.23
H-Bond Acceptor 6
H-Bond Donor 2
Rotatable Bonds 1

Synonyms

Top
CHEMBL1911627
CHEBI:69024
maimone82
8TC
BDBM50355789
XG-I-186-1
Q27137366
rel-methyl (3R,4aS,6aS,7R,9S,11R,12aS,12bS)-3,9-dihydroxy-4,4,6a,9,11,12b-hexamethyl-13-methylidene-8,10-dioxotetradecahydro-7,11-methanocycloocta[a]naphthalene-7(2H)-carboxylate

2D Structure

Top
2D Structure of Berkeleyone A

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9857 98.57%
Caco-2 + 0.5000 50.00%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability + 0.5429 54.29%
Subcellular localzation Mitochondria 0.8094 80.94%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8921 89.21%
OATP1B3 inhibitior - 0.4057 40.57%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.6821 68.21%
BSEP inhibitior - 0.6804 68.04%
P-glycoprotein inhibitior - 0.5993 59.93%
P-glycoprotein substrate - 0.7530 75.30%
CYP3A4 substrate + 0.6963 69.63%
CYP2C9 substrate - 0.7907 79.07%
CYP2D6 substrate - 0.8324 83.24%
CYP3A4 inhibition - 0.6374 63.74%
CYP2C9 inhibition - 0.7470 74.70%
CYP2C19 inhibition - 0.7269 72.69%
CYP2D6 inhibition - 0.9501 95.01%
CYP1A2 inhibition - 0.7294 72.94%
CYP2C8 inhibition - 0.6686 66.86%
CYP inhibitory promiscuity - 0.9662 96.62%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9643 96.43%
Carcinogenicity (trinary) Non-required 0.6724 67.24%
Eye corrosion - 0.9915 99.15%
Eye irritation - 0.8637 86.37%
Skin irritation + 0.5183 51.83%
Skin corrosion - 0.9485 94.85%
Ames mutagenesis - 0.6400 64.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6449 64.49%
Micronuclear - 0.7700 77.00%
Hepatotoxicity - 0.7643 76.43%
skin sensitisation - 0.6960 69.60%
Respiratory toxicity + 0.6667 66.67%
Reproductive toxicity + 0.9333 93.33%
Mitochondrial toxicity + 0.8125 81.25%
Nephrotoxicity - 0.6907 69.07%
Acute Oral Toxicity (c) I 0.4941 49.41%
Estrogen receptor binding + 0.5810 58.10%
Androgen receptor binding + 0.6699 66.99%
Thyroid receptor binding + 0.5695 56.95%
Glucocorticoid receptor binding + 0.6834 68.34%
Aromatase binding + 0.7780 77.80%
PPAR gamma - 0.5000 50.00%
Honey bee toxicity - 0.7532 75.32%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.5500 55.00%
Fish aquatic toxicity + 0.9961 99.61%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1909490 P01584 Interleukin-1 beta 2700 nM
IC50
PMID: 21916432

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 92.88% 82.69%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.88% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 91.52% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 88.37% 94.45%
CHEMBL340 P08684 Cytochrome P450 3A4 86.47% 91.19%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 85.26% 93.03%
CHEMBL204 P00734 Thrombin 84.98% 96.01%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 84.90% 94.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.66% 95.89%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 84.45% 91.07%
CHEMBL2581 P07339 Cathepsin D 84.32% 98.95%
CHEMBL1994 P08235 Mineralocorticoid receptor 83.86% 100.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.15% 97.09%
CHEMBL1937 Q92769 Histone deacetylase 2 82.25% 94.75%
CHEMBL1871 P10275 Androgen Receptor 80.98% 96.43%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Clibadium microcephalum
Globularia nudicaulis
Helianthus pumilus
Leucas aspera
Stemona parviflora

Cross-Links

Top
PubChem 57391090
NPASS NPC223169
ChEMBL CHEMBL1911627
LOTUS LTS0261126
wikiData Q27137366