alpha-Methylcubebin

Details

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Internal ID e0f288d0-30b2-486b-af1b-a6357a52a517
Taxonomy Lignans, neolignans and related compounds > Furanoid lignans > Tetrahydrofuran lignans > 9,9-epoxylignans
IUPAC Name 5-[[(2R,3R,4R)-4-(1,3-benzodioxol-5-ylmethyl)-2-methoxyoxolan-3-yl]methyl]-1,3-benzodioxole
SMILES (Canonical) COC1C(C(CO1)CC2=CC3=C(C=C2)OCO3)CC4=CC5=C(C=C4)OCO5
SMILES (Isomeric) CO[C@H]1[C@@H]([C@H](CO1)CC2=CC3=C(C=C2)OCO3)CC4=CC5=C(C=C4)OCO5
InChI InChI=1S/C21H22O6/c1-22-21-16(7-14-3-5-18-20(9-14)27-12-25-18)15(10-23-21)6-13-2-4-17-19(8-13)26-11-24-17/h2-5,8-9,15-16,21H,6-7,10-12H2,1H3/t15-,16+,21+/m0/s1
InChI Key UUUXPUGZNDRYSV-GCKMJXCFSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C21H22O6
Molecular Weight 370.40 g/mol
Exact Mass 370.14163842 g/mol
Topological Polar Surface Area (TPSA) 55.40 Ų
XlogP 3.90
Atomic LogP (AlogP) 3.16
H-Bond Acceptor 6
H-Bond Donor 0
Rotatable Bonds 5

Synonyms

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CHEMBL520915
D00GOQ
BDBM50259857

2D Structure

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2D Structure of alpha-Methylcubebin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9859 98.59%
Caco-2 + 0.8001 80.01%
Blood Brain Barrier + 0.7250 72.50%
Human oral bioavailability - 0.7286 72.86%
Subcellular localzation Mitochondria 0.7337 73.37%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9356 93.56%
OATP1B3 inhibitior + 0.9723 97.23%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior + 0.9424 94.24%
P-glycoprotein inhibitior + 0.7645 76.45%
P-glycoprotein substrate - 0.7896 78.96%
CYP3A4 substrate - 0.5055 50.55%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.3679 36.79%
CYP3A4 inhibition + 0.9388 93.88%
CYP2C9 inhibition + 0.8210 82.10%
CYP2C19 inhibition + 0.9564 95.64%
CYP2D6 inhibition + 0.7211 72.11%
CYP1A2 inhibition + 0.8367 83.67%
CYP2C8 inhibition - 0.7491 74.91%
CYP inhibitory promiscuity + 0.9562 95.62%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.8908 89.08%
Carcinogenicity (trinary) Warning 0.4074 40.74%
Eye corrosion - 0.9822 98.22%
Eye irritation - 0.8200 82.00%
Skin irritation - 0.7783 77.83%
Skin corrosion - 0.9529 95.29%
Ames mutagenesis + 0.6500 65.00%
Human Ether-a-go-go-Related Gene inhibition + 0.9170 91.70%
Micronuclear + 0.5500 55.00%
Hepatotoxicity + 0.5503 55.03%
skin sensitisation - 0.6254 62.54%
Respiratory toxicity + 0.5444 54.44%
Reproductive toxicity + 0.6333 63.33%
Mitochondrial toxicity - 0.5000 50.00%
Nephrotoxicity - 0.8239 82.39%
Acute Oral Toxicity (c) III 0.6462 64.62%
Estrogen receptor binding + 0.9026 90.26%
Androgen receptor binding + 0.7392 73.92%
Thyroid receptor binding + 0.6555 65.55%
Glucocorticoid receptor binding + 0.7030 70.30%
Aromatase binding + 0.6843 68.43%
PPAR gamma + 0.6286 62.86%
Honey bee toxicity - 0.7938 79.38%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity - 0.5300 53.00%
Fish aquatic toxicity + 0.9855 98.55%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL340 P08684 Cytochrome P450 3A4 7700 nM
IC50
PMID: 15679319

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4481 P35228 Nitric oxide synthase, inducible 98.06% 94.80%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 97.14% 94.45%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 95.22% 96.77%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 94.72% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.37% 96.09%
CHEMBL2581 P07339 Cathepsin D 93.26% 98.95%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 92.06% 92.62%
CHEMBL4225 P49760 Dual specificity protein kinase CLK2 87.13% 80.96%
CHEMBL1293249 Q13887 Kruppel-like factor 5 85.52% 86.33%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.38% 97.09%
CHEMBL5608 Q16288 NT-3 growth factor receptor 85.38% 95.89%
CHEMBL2039 P27338 Monoamine oxidase B 84.94% 92.51%
CHEMBL264 Q9Y5N1 Histamine H3 receptor 82.33% 91.43%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 80.67% 93.40%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.34% 99.17%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 80.14% 94.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Arctium lappa
Artemisia chamaemelifolia
Hypoestes purpurea
Lychnophora ericoides
Piper cubeba
Virola surinamensis

Cross-Links

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PubChem 44575384
NPASS NPC158737
ChEMBL CHEMBL520915
LOTUS LTS0260221
wikiData Q104399134