Protoberberine

Details

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Internal ID 4fd03383-ac05-4c47-a035-278bdffa91cc
Taxonomy Alkaloids and derivatives > Protoberberine alkaloids and derivatives
IUPAC Name 5,6-dihydroisoquinolino[2,1-b]isoquinolin-7-ium
SMILES (Canonical) C1C[N+]2=CC3=CC=CC=C3C=C2C4=CC=CC=C41
SMILES (Isomeric) C1C[N+]2=CC3=CC=CC=C3C=C2C4=CC=CC=C41
InChI InChI=1S/C17H14N/c1-2-7-15-12-18-10-9-13-5-3-4-8-16(13)17(18)11-14(15)6-1/h1-8,11-12H,9-10H2/q+1
InChI Key UICBHOXXGLYZJH-UHFFFAOYSA-N
Popularity 156 references in papers

Physical and Chemical Properties

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Molecular Formula C17H14N+
Molecular Weight 232.30 g/mol
Exact Mass 232.112624451 g/mol
Topological Polar Surface Area (TPSA) 3.90 Ų
XlogP 3.90
Atomic LogP (AlogP) 3.35
H-Bond Acceptor 0
H-Bond Donor 0
Rotatable Bonds 0

Synonyms

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5,6-Dihydrodibenzo(a,g)quinolizinium
19716-69-9
5,6-dihydroisoquinolino[2,1-b]isoquinolin-7-ium
5,6-Dihydroisoquinolino[3,2-a]isoquinolin-7-ium
2,3,11-Trimethoxy-5,6,13,13a-tetrahydro-8H-dibenzo(a,g)quinolizine
5,6-dihydrodibenzo[a,g]quinolizinium
Dibenzo(a,g)quinolizinium, 5,6-dihydro-
Dibenzo[a,g]quinolizinium, 5,6-dihydro-
SCHEMBL918329
C17H14N
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Protoberberine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9254 92.54%
Caco-2 + 0.9183 91.83%
Blood Brain Barrier + 0.9250 92.50%
Human oral bioavailability + 0.6571 65.71%
Subcellular localzation Mitochondria 0.6117 61.17%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9414 94.14%
OATP1B3 inhibitior + 0.9544 95.44%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior + 0.7250 72.50%
BSEP inhibitior + 0.7334 73.34%
P-glycoprotein inhibitior - 0.8611 86.11%
P-glycoprotein substrate - 0.9357 93.57%
CYP3A4 substrate - 0.5370 53.70%
CYP2C9 substrate - 0.6077 60.77%
CYP2D6 substrate - 0.6946 69.46%
CYP3A4 inhibition - 0.9241 92.41%
CYP2C9 inhibition - 0.7811 78.11%
CYP2C19 inhibition - 0.5662 56.62%
CYP2D6 inhibition + 0.5686 56.86%
CYP1A2 inhibition + 0.6121 61.21%
CYP2C8 inhibition - 0.8948 89.48%
CYP inhibitory promiscuity + 0.5561 55.61%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9100 91.00%
Carcinogenicity (trinary) Non-required 0.6975 69.75%
Eye corrosion - 0.9199 91.99%
Eye irritation + 0.5923 59.23%
Skin irritation + 0.7787 77.87%
Skin corrosion - 0.8327 83.27%
Ames mutagenesis + 0.6600 66.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4782 47.82%
Micronuclear - 0.5541 55.41%
Hepatotoxicity + 0.6694 66.94%
skin sensitisation - 0.8156 81.56%
Respiratory toxicity + 0.6111 61.11%
Reproductive toxicity - 0.5111 51.11%
Mitochondrial toxicity + 0.8375 83.75%
Nephrotoxicity + 0.6103 61.03%
Acute Oral Toxicity (c) II 0.6530 65.30%
Estrogen receptor binding + 0.9713 97.13%
Androgen receptor binding + 0.7455 74.55%
Thyroid receptor binding + 0.6836 68.36%
Glucocorticoid receptor binding + 0.6351 63.51%
Aromatase binding + 0.9407 94.07%
PPAR gamma + 0.8291 82.91%
Honey bee toxicity - 0.9146 91.46%
Biodegradation - 0.9500 95.00%
Crustacea aquatic toxicity + 0.8600 86.00%
Fish aquatic toxicity - 0.6814 68.14%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 93.81% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.33% 95.56%
CHEMBL1951 P21397 Monoamine oxidase A 88.79% 91.49%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 87.15% 91.11%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 86.97% 82.69%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.94% 86.33%
CHEMBL3902 P09211 Glutathione S-transferase Pi 83.39% 93.81%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 83.31% 95.83%
CHEMBL2056 P21728 Dopamine D1 receptor 82.92% 91.00%
CHEMBL3401 O75469 Pregnane X receptor 82.79% 94.73%
CHEMBL2378 P30307 Dual specificity phosphatase Cdc25C 81.46% 96.67%
CHEMBL1841 P06241 Tyrosine-protein kinase FYN 80.94% 81.29%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 80.69% 96.09%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Phellodendron amurense
Phellodendron chinense

Cross-Links

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PubChem 114943
NPASS NPC156422