5-Methylcoumarin-4-gentiobioside

Details

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Internal ID 6eb3a88a-188b-4432-a4d5-4d628550ddf3
Taxonomy Phenylpropanoids and polyketides > Coumarins and derivatives > Coumarin glycosides
IUPAC Name 5-methyl-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxan-2-yl]oxychromen-2-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C22H28O13/c1-8-3-2-4-9-14(8)10(5-13(24)32-9)33-22-20(30)18(28)16(26)12(35-22)7-31-21-19(29)17(27)15(25)11(6-23)34-21/h2-5,11-12,15-23,25-30H,6-7H2,1H3/t11-,12-,15-,16-,17+,18+,19-,20-,21-,22-/m1/s1
InChI Key LGVTTZBZMYKZOR-NYKIBTIESA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C22H28O13
Molecular Weight 500.40 g/mol
Exact Mass 500.15299094 g/mol
Topological Polar Surface Area (TPSA) 205.00 Ų
XlogP -2.30
Atomic LogP (AlogP) -2.90
H-Bond Acceptor 13
H-Bond Donor 7
Rotatable Bonds 6

Synonyms

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5-Methylcoumarin-4-gentiobioside
109974-32-5
DTXSID20149086
RefChem:103181
DTXCID7071577
2H-1-Benzopyran-2-one, 4-((6-O-beta-D-glucopyranosyl-beta-D-glucopyranosyl)oxy)-5-methyl-
5-methyl-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]oxan-2-yl]oxychromen-2-one

2D Structure

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2D Structure of 5-Methylcoumarin-4-gentiobioside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.6673 66.73%
Caco-2 - 0.8727 87.27%
Blood Brain Barrier - 0.6750 67.50%
Human oral bioavailability - 0.7429 74.29%
Subcellular localzation Mitochondria 0.6320 63.20%
OATP2B1 inhibitior - 0.8457 84.57%
OATP1B1 inhibitior + 0.9034 90.34%
OATP1B3 inhibitior + 0.9717 97.17%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior - 0.5360 53.60%
P-glycoprotein inhibitior - 0.7336 73.36%
P-glycoprotein substrate - 0.8003 80.03%
CYP3A4 substrate + 0.5586 55.86%
CYP2C9 substrate - 0.8232 82.32%
CYP2D6 substrate - 0.8681 86.81%
CYP3A4 inhibition - 0.9604 96.04%
CYP2C9 inhibition - 0.9542 95.42%
CYP2C19 inhibition - 0.9251 92.51%
CYP2D6 inhibition - 0.9462 94.62%
CYP1A2 inhibition - 0.9100 91.00%
CYP2C8 inhibition - 0.6473 64.73%
CYP inhibitory promiscuity - 0.8072 80.72%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.6171 61.71%
Eye corrosion - 0.9923 99.23%
Eye irritation - 0.9476 94.76%
Skin irritation - 0.8389 83.89%
Skin corrosion - 0.9692 96.92%
Ames mutagenesis + 0.5046 50.46%
Human Ether-a-go-go-Related Gene inhibition - 0.4430 44.30%
Micronuclear + 0.5433 54.33%
Hepatotoxicity - 0.6546 65.46%
skin sensitisation - 0.9230 92.30%
Respiratory toxicity + 0.5111 51.11%
Reproductive toxicity + 0.6222 62.22%
Mitochondrial toxicity - 0.5375 53.75%
Nephrotoxicity - 0.6964 69.64%
Acute Oral Toxicity (c) III 0.6211 62.11%
Estrogen receptor binding + 0.8134 81.34%
Androgen receptor binding - 0.5000 50.00%
Thyroid receptor binding + 0.5544 55.44%
Glucocorticoid receptor binding + 0.6158 61.58%
Aromatase binding + 0.7100 71.00%
PPAR gamma + 0.7408 74.08%
Honey bee toxicity - 0.8562 85.62%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.6200 62.00%
Fish aquatic toxicity + 0.7000 70.00%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL220 P22303 Acetylcholinesterase 99.69% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.05% 91.11%
CHEMBL2581 P07339 Cathepsin D 96.34% 98.95%
CHEMBL3401 O75469 Pregnane X receptor 95.83% 94.73%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 94.16% 94.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.00% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 92.13% 86.33%
CHEMBL1806 P11388 DNA topoisomerase II alpha 91.43% 89.00%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 91.08% 96.21%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 87.60% 96.09%
CHEMBL5409 Q8TDU6 G-protein coupled bile acid receptor 1 85.64% 93.65%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 85.44% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.08% 97.09%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 84.80% 96.95%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 84.32% 96.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 83.66% 99.23%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Coptis chinensis
Leibnitzia anandria

Cross-Links

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PubChem 3080987
NPASS NPC44740